Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L12
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 263 1e-70
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 262 4e-70
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 225 5e-59
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 31 0.99
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891... 30 3.0
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 4.0
09_01_0051 - 862286-864670 29 7.0
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 28 9.2
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 28 9.2
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 263 bits (645), Expect = 1e-70
Identities = 128/233 (54%), Positives = 165/233 (70%)
Frame = +1
Query: 166 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 345
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 346 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 525
PLL GV+ T++ EAFK V A ++G PR++GMERKDL++ NV I+K Q AL + A
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 159
Query: 526 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 705
+ KVLVV NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A K+ V V DVK I
Sbjct: 160 NCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 219
Query: 706 IWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 864
IWGNHSSTQFPDAS+A ++ V E+I D+ +L+ FVT VQ+RGAAVI
Sbjct: 220 IWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVI 272
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 262 bits (641), Expect = 4e-70
Identities = 126/233 (54%), Positives = 162/233 (69%)
Frame = +1
Query: 166 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 345
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 346 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 525
PLL G++ T + EA V A +VG PRKEGMERKD+++ NV I+K Q AL+ A
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAP 123
Query: 526 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 705
+ KVLVV NPANTNALI ++APSIP++N T +TRLD NRA Q++ K+ V V DVK I
Sbjct: 124 NCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAI 183
Query: 706 IWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 864
IWGNHSSTQ+PD ++A +K V E++ DD +L F++TVQ+RGAA+I
Sbjct: 184 IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAII 236
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 225 bits (549), Expect = 5e-59
Identities = 120/231 (51%), Positives = 150/231 (64%)
Frame = +1
Query: 172 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 351
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 352 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDV 531
L V +P F+D A L+GA PR GMER LL N +IF EQG+AL+ A ++V
Sbjct: 134 LREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNV 193
Query: 532 KVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIW 711
KV+VVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV V + IW
Sbjct: 194 KVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 253
Query: 712 GNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 864
GNHS+TQ PD NA + G + V E+I D +L+ F TVQKRG +I
Sbjct: 254 GNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLEDEFTKTVQKRGGVLI 300
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 31.5 bits (68), Expect = 0.99
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = -2
Query: 542 TRTFTSLRAALSKAWPCSLKMRTLAARRSFLSIP---SFLGIAPTRKAAATSLKASSGFA 372
TR +++AA A + R L + S +S+P S IA RK++++ SSG
Sbjct: 65 TRELEAIKAAPPHATAAATTPRRLRRQSSPVSVPCGASPRKIAALRKSSSSLSTTSSGGG 124
Query: 371 VGR-TPAKSGRAQSA--------NSMTTPSSTPIIGA 288
GR T S SA +S TTP+S+P++ A
Sbjct: 125 SGRRTDRVSAEESSACKTAACRRSSSTTPASSPMLAA 161
>02_05_0329 -
27986261-27987372,27988632-27988638,27988999-27989128,
27989157-27989216,27989318-27989970,27990056-27990526
Length = 810
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -2
Query: 500 WPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGR 363
+P L TLAAR +F++ PS + +A K+ +T LKA + V R
Sbjct: 514 YPAHLMPATLAARDTFVARPSDVILATMPKSGSTWLKALAFCVVHR 559
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 148 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 312
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
>09_01_0051 - 862286-864670
Length = 794
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 482 MRTLAARRSFLSIPSFLGIAPTRKAAATSLKA 387
MR AA RSFL +PS I T A++ SL A
Sbjct: 1 MRCAAAARSFLPLPSTTRIHTTATASSPSLAA 32
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -2
Query: 428 IAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTP---SSTPIIGA--ISRRWRKT 264
+A AAAT + +G +V TP G + + TTP S P+I + + R
Sbjct: 225 LAAAAAAAATCSSSPAGSSVPITPTAVGHSGGGQTQTTPCAFSEAPVITSDDVEANLRLL 284
Query: 263 GC 258
GC
Sbjct: 285 GC 286
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 28.3 bits (60), Expect = 9.2
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -2
Query: 449 SIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAIS 282
S P+F G T A T + A TP+ G +A + TPSSTP GA S
Sbjct: 25 STPAF-GTPSTNPAFGTPSSTPAFGAPSSTPS-FGTPSTAPAFGTPSSTPAFGAPS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,342,809
Number of Sequences: 37544
Number of extensions: 491256
Number of successful extensions: 1480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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