Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L11
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    42   8e-05
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.3  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   9.7  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
 Frame = +1

Query: 358 DIPGPR--ISESEIGITEYISDHKGFI-GIIKWRYSDFQVSEINEDGVIAKLTDLK 516
           D+ G +  ++ES++GI  +++ +   I GIIK R++DF V E++ DG I  LTD++
Sbjct: 39  DLSGQKFYMTESDVGIDAFLNPNLPSIDGIIKARFTDFAVFEVDTDGNIVHLTDME 94


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 512  RSVNFAITPSSLISDT*KSEYRHLIIPI 429
            RSV++ +  S +I  +   EY HL++P+
Sbjct: 945  RSVSYKVLQSFVIFGSNIEEYMHLVLPV 972


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 192 NLQNEIYFRRQFLFCSNF 139
           +L NE+YF RQ+ +  N+
Sbjct: 7   SLSNELYFVRQYFYSGNY 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,881
Number of Sequences: 5004
Number of extensions: 44869
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)