Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L10
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.86 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   1.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   2.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.6  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.6  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   6.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   8.1  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 563 EMGEALK--QMADVKYSLDDNIKQSFLEPLHH--LQTKDLKEVMHHRKKL 700
           E+ EA+K  Q+ D+   + D +KQ+FLE L H     +D K ++   +KL
Sbjct: 661 ELREAIKDVQVGDMSDFISDLLKQNFLESLVHGNYTEEDAKNLIESAQKL 710


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 426 AAIFALAVGFGCRNSLVFVCNSS---TNSHVTSVFLSISTKSKSNF 298
           AAI AL+V   C N   +V NS+   TN  + +VF S   K   ++
Sbjct: 785 AAITALSVLDACNNGTKYVVNSTSKLTNEEINNVFESYDLKRLESY 830


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 574 LSHLDEAL*KYSIFAKFLSVMQHAVTEHSFRLWVGIAFRLSAQFANSLD 428
           + H+D  L K++I  KFL +   A+  ++      I+F L+   A S++
Sbjct: 743 VEHVDTVLDKFAISEKFLGLTLFALVPNTTEFMNAISFALNENIALSME 791


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 370 LQFFNQFTRYVCFSFHFHEVQIQFCAFRATHFLCDI 263
           +QFF  F +Y   S  F    I+FC     H L ++
Sbjct: 157 VQFFKSFLQYRAPSMDFQHEGIEFCKINVRHELMNL 192


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 372 VCNSSTNSHVTSVFLSISTKSKSNFVPSAPPIFSVTY*LALLICFFN-PANAMLTCMLVS 196
           +C  S N H++SV  SIS +  S  +     +FS    +A L+   N P  A L CML S
Sbjct: 266 ICADSINFHLSSVEKSISQQKASELMYK---LFSEH--IAFLLSLKNLPEEATLDCML-S 319

Query: 195 FVHLFNKFRRNRSY 154
              +F     +R +
Sbjct: 320 ICQVFENDNLHRGH 333


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 465 AIPTHNLKECSVTACCITERNLAKILYF 548
           A+P  +L+ECS  +  IT+R    + YF
Sbjct: 18  AVPKQSLQECSYMSNLITDRESTFLSYF 45


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 ELVEELQTKTKEFLQPNPTARAKMAAVKGISKL 448
           EL EEL+   +  LQPN  AR +    +G+  L
Sbjct: 467 ELQEELEFPDEVELQPNELARERFKKYRGLRSL 499


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 665 PWSASDAEVPKNFA*CYRLANTLHRPS 585
           P   SD  + + F  C+ L N LHRP+
Sbjct: 187 PKKVSDILIEQFFFRCHMLINVLHRPT 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,400
Number of Sequences: 5004
Number of extensions: 77226
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)