Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L10
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 31 0.91
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 30 2.8
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 29 3.7
01_06_1392 + 36995579-36996028,36997145-36997375 29 3.7
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 29 4.9
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333... 29 4.9
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 28 8.5
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 28 8.5
06_01_0804 + 6038640-6040262 28 8.5
02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864,601... 28 8.5
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 31.5 bits (68), Expect = 0.91
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 411 LAVGFGCRNSLVFVCNSSTNSHVTSVFLSISTKSKSNFVPSAPPIFSVTY*LALLICFFN 232
+ GF C L FV + H T S+ T++ + +P PI+ LA++ FF
Sbjct: 323 ITFGFAC-TPLYFVWEKAIGMHGTR---SVLTRALAR-LPIVVPIWF----LAIIFPFFG 373
Query: 231 PANAMLTCMLVSF-VHLFNKFRRNRSYRVCS 142
P N+ + +LVSF V++ +YR S
Sbjct: 374 PINSAVGALLVSFTVYIIPSLSHILTYRSAS 404
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 435 ELAN*ADKRKAIPTHNLKECSVTACCITE 521
E+ N +K + + +LKECS+TA C+ E
Sbjct: 709 EIMNEKNKLEELLEESLKECSITAACLDE 737
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 413 AKMAAVKGISKLSGQAKSNTYPQPEGV-LGDCMLHYGKKLGEDTIFSQCLIEMGEA 577
A ++ ++ ++G ++T+ PE V LG C + +GED + +EMG+A
Sbjct: 285 ADFEGIERLALVTGGDIASTFDNPESVKLGHCKVIEEIMIGEDRLIHFSGVEMGQA 340
>01_06_1392 + 36995579-36996028,36997145-36997375
Length = 226
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -2
Query: 411 LAVGFGCRNSLVFVCNSSTNSHVTSVFLSISTKSKSNFVPSAPPIFSVTY*LALLICFFN 232
+ GF C L FV H T SI ++ + +P PI+ LA++ FF
Sbjct: 66 ITFGFAC-TPLYFVWEKVIGMHDTK---SICLRALAR-LPIVVPIWF----LAIIFPFFG 116
Query: 231 PANAMLTCMLVSF-VHLFNKFRRNRSYRVCS 142
P N+ + +LVSF V++ +YR S
Sbjct: 117 PINSAVGALLVSFTVYIIPALAHILTYRTAS 147
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +2
Query: 602 YSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGSHIPDDEIXQ 781
+ +DD ++ P + + KDL+E+ + + D RR+Q G + ++
Sbjct: 97 FCIDDQAQEIKTVPQNQSEAKDLREICKMSSEEINKTCDSKGHRRQQLSGRKVDVRKLRS 156
Query: 782 AEXKFAESLQLA 817
A+ A L +A
Sbjct: 157 ADVNDAVELSIA 168
>03_06_0027 +
31131621-31131676,31131681-31132350,31133152-31133319,
31134771-31134986,31135593-31135909,31136058-31136169,
31136256-31136492,31136582-31137172
Length = 788
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 446 LSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCL 559
L G+ +S T P +GV+ CML G LG D + S CL
Sbjct: 636 LQGKLRS-TQPLAKGVVATCMLGAGNFLG-DELLSWCL 671
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 28.3 bits (60), Expect = 8.5
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +2
Query: 227 AGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPT 406
A L +N NQ VT+ M K+D++ + ++ + C L E + T
Sbjct: 408 ADLTAHVNVFNQLVTDFM------KMDVEVDDEDKAIVLLCSLPESYEHVVTTLTYGKKT 461
Query: 407 ARAK--MAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIF 547
+ K +A+ ++ + T Q EG+L H G KLG+DT +
Sbjct: 462 IKTKDITSALLARDQMRKNKEGET-SQAEGLLVK-EDHVGHKLGDDTSY 508
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 596 VKYSLDDNIKQSFLEPLHHLQTK 664
+K LDDN+K+ FL PL ++ K
Sbjct: 428 IKVKLDDNLKKKFLYPLCKIRAK 450
>06_01_0804 + 6038640-6040262
Length = 540
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +2
Query: 203 NIQVNMAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTK 382
++QV+ AFA L + + A Q E + ++ E E+ +L + + +
Sbjct: 291 DVQVSDAFAALAEALYAAEQKAREAVETRAKVHTEMKMREKEKAEQHLLQLATKARAEML 350
Query: 383 EFLQPNPTARAKMAA 427
P P+ R+K AA
Sbjct: 351 GAAPPAPSERSKAAA 365
>02_01_0009 +
58815-58884,59086-59156,59632-59725,59797-59864,
60145-60243,60538-60594,60943-61011,63111-63179,
63372-64322
Length = 515
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 299 KLDLDFVEMERKTD-VTCELVEELQTKTKEFLQPNPTARAKMAAV 430
++DLD VE+ RK+D C++++ + K K+ ++ + K A V
Sbjct: 94 RMDLDLVEVHRKSDPPVCKIMDFHKEKYKKDVKEKERLKTKSAIV 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,247,258
Number of Sequences: 37544
Number of extensions: 493050
Number of successful extensions: 1222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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