Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L10
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 193 1e-49
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11) 31 1.2
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 31 1.2
SB_58673| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 31 1.6
SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0) 31 1.6
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 3.8
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 29 6.6
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11) 29 6.6
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 6.6
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 28 8.7
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 193 bits (471), Expect = 1e-49
Identities = 99/205 (48%), Positives = 137/205 (66%), Gaps = 3/205 (1%)
Frame = +2
Query: 224 FAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQPNP 403
FAGLKKQINKANQYV+EKMG AEGTK++ +F+EMERKTD ELV L KTKE+LQPN
Sbjct: 5 FAGLKKQINKANQYVSEKMGSAEGTKMEDEFIEMERKTDALIELVANLTPKTKEYLQPNA 64
Query: 404 TARAKMAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGE---DTIFSQCLIEMGE 574
T AK+ K+ YP EG++GD M+ G+++G+ + ++ L++
Sbjct: 65 TYNAKV-------KMHMTQPDEKYPYTEGLMGDVMMLAGQEIGQVGKGSDYAAALLDFAG 117
Query: 575 ALKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGS 754
AL ++A+ ++ LD+ + +FL PLH L+ DLKE+ +RKKLQGRRLD+DCK+R KG+
Sbjct: 118 ALHELAETRHELDEKVHSNFLGPLHDLEANDLKELTFNRKKLQGRRLDYDCKKR---KGN 174
Query: 755 HIPDDEIXQAEXKFAESLQLAQVGM 829
+ +EI A+ KF ES L + GM
Sbjct: 175 KVSIEEIKTAQFKFEESKNLCKQGM 199
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 38.3 bits (85), Expect = 0.008
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 2/170 (1%)
Frame = +2
Query: 233 LKKQINKANQYVTEKMGGAEGTK-LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTA 409
+KKQ + Q +K+G AE T+ L +D +E+ D + + +Q + +
Sbjct: 1 MKKQFYRVKQLADQKVGRAEKTEILSVDLQNVEKTVDKIKTACQSASKRISASMQGSGSD 60
Query: 410 RAKMAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQM 589
+ + KL+ +N+ ML +LG+ ++ L + GEA +
Sbjct: 61 FERR-----LRKLNQTGLANS-----------MLESSNQLGDMSLLGMVLSQTGEAQLSI 104
Query: 590 ADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFD-CKRR 736
A + +++++ + P+ + D+ + +KKL L+ D CK R
Sbjct: 105 ARSLCEFEMSVEKNVMIPMTTILENDIPNIYQAKKKLSKAALEMDTCKSR 154
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 479 QPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMADVK 601
Q +G L + +LHY + + F+ MG LK+M D++
Sbjct: 375 QQQGKLQEALLHYKEAIRIHPTFADAFSNMGNLLKEMQDIQ 415
>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
Length = 900
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 708 RPCNFFRWCMTSFKSL-VCK*CRGSKK---LCLMLSSSEYFTSAICFRASPISMRHCENI 541
R N+ R KSL + C GS++ C+ + Y ++C A P++ + CE
Sbjct: 647 RCLNYTRKTALKMKSLLILLLCTGSQERDVACVRIDDGTYVRDSVCAGAKPVTSQDCETA 706
Query: 540 VSSP 529
+P
Sbjct: 707 TCTP 710
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 191 TNETNIQVNMAFAGLKKQINKANQY-VTEKMGGAEGTK---LDLDFVEMERKTDVTCELV 358
T E + VN L+K + K ++ TE+ G T+ +LD E+ +K CE V
Sbjct: 460 TEENTLNVN----ALEKLLTKKDESGETERSGSKAQTRDMSKELDISEINKKFQSLCEEV 515
Query: 359 EELQTKTKEF 388
E+L+ K EF
Sbjct: 516 EQLEFKMYEF 525
>SB_58673| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 218
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 572 EALKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRR---LDFDCKRRRQ 742
+ +++MAD+ D +I + L LKE R+KLQG + + K+ Q
Sbjct: 47 DRMRKMADLAVQYDQSIAEMLQRQTLRLDEVQLKEQEEFRQKLQGEQELLSAYQSKQAMQ 106
Query: 743 AKGSHIPDDEIXQAEXKFAESL 808
K H +++ Q + +L
Sbjct: 107 LKAQHEREEKELQDKVSVRRAL 128
>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
Length = 224
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 233 LKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKT 337
L +++ +N+ +T+K+ E KLD++ VE++ K+
Sbjct: 150 LLEKLQNSNEAITQKLSSEEAGKLDIEKVEVDEKS 184
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +2
Query: 578 LKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGSH 757
+++M D ++D++I + LE L + D KE + ++KLQG D +R+R +
Sbjct: 3491 IQEMKDA--TVDNDITKDELERLKKIVENDEKEKENLKRKLQGSDSDGTMERKRLQRDMS 3548
Query: 758 IPDDEIXQAE 787
EI + E
Sbjct: 3549 DARAEISRLE 3558
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 575 ALKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGR-RLDFDCKRRRQAKG 751
A+ D+K LDD ++Q +E + + + +R+K GR R+ D K QA
Sbjct: 338 AISLKDDIKQELDDMVEQGIIEKVREGEPTAWDNSLVYRRKPNGRLRICLDPKDLNQAIK 397
Query: 752 SHIPD 766
+ P+
Sbjct: 398 RNPPE 402
>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
Length = 1068
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -2
Query: 627 CLMLSSSEYFTSAICFRASPISMRHCENIVSSPSFF 520
CL + Y ++C A P++ + CE + S++
Sbjct: 714 CLRIDDGTYVRDSVCAGAKPVTTQDCETATCTASWY 749
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 356 VEELQTKTKEFLQPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGVLG 499
V E +T+ Q A+AK+ +KGI K + S YP P+ + G
Sbjct: 46 VGENRTRLDSLNQRVDLAQAKIDRIKGIKKATRVCSSAKYPAPQKLEG 93
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 617 NIKQSFLEPLHHLQTKDLKEVMHHRKKLQGR 709
++++ L+ + H+Q +KE MHH K + R
Sbjct: 243 DVQRQLLDVMSHVQMTSVKEQMHHLKFMNAR 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,271,671
Number of Sequences: 59808
Number of extensions: 582929
Number of successful extensions: 1399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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