Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L10
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY394006-1|AAQ96373.1| 377|Caenorhabditis elegans endophilin pr... 225 2e-59
AF067617-2|AAC17558.3| 377|Caenorhabditis elegans Uncoordinated... 225 2e-59
AF067617-1|ABQ13063.1| 379|Caenorhabditis elegans Uncoordinated... 225 2e-59
U46675-5|AAL32215.1| 281|Caenorhabditis elegans Endophilin-rela... 69 4e-12
U46675-4|AAB52640.1| 366|Caenorhabditis elegans Endophilin-rela... 69 4e-12
AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical... 36 0.029
AF016676-1|AAG24103.1| 598|Caenorhabditis elegans Hypothetical ... 35 0.066
U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical pr... 33 0.35
U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical pr... 33 0.35
U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc... 31 0.81
U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac... 31 0.81
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac... 31 0.81
U64858-6|AAB18283.2| 392|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 31 1.4
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr... 29 3.3
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 29 3.3
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln (neur... 29 5.7
AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein. 29 5.7
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z66566-2|CAA91485.1| 537|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical pr... 28 7.6
X60233-1|CAA42793.1| 537|Caenorhabditis elegans LIN-14A protein. 28 7.6
X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein. 28 7.6
X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein. 28 7.6
>AY394006-1|AAQ96373.1| 377|Caenorhabditis elegans endophilin
protein.
Length = 377
Score = 225 bits (551), Expect = 2e-59
Identities = 107/209 (51%), Positives = 147/209 (70%)
Frame = +2
Query: 218 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQP 397
M+ +GL+KQ NKANQY++E MG AE TKLD F EME+ D T L+ +L T E+LQP
Sbjct: 1 MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEKNVDTTYNLITDLVAGTNEYLQP 60
Query: 398 NPTARAKMAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEA 577
NP RAKMA +SK+ G K++ YPQ EG+L D M YG++LG+++ + L + E
Sbjct: 61 NPATRAKMATQVALSKVRGTTKTSPYPQTEGMLADVMQKYGQQLGDNSDLGKSLNDAAET 120
Query: 578 LKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGSH 757
+QMAD+KY ++DN+KQ+FL+PL HLQ +LK+V HHR KL+GRRLD+DCK+R+Q +
Sbjct: 121 YRQMADIKYQMEDNVKQNFLDPLTHLQNNELKDVNHHRTKLKGRRLDYDCKKRQQRR--- 177
Query: 758 IPDDEIXQAEXKFAESLQLAQVGMFIFLT 844
DDE+ QAE K ES +LA++ MF L+
Sbjct: 178 --DDEMIQAEEKLEESKRLAEMSMFNVLS 204
>AF067617-2|AAC17558.3| 377|Caenorhabditis elegans Uncoordinated
protein 57, isoform a protein.
Length = 377
Score = 225 bits (551), Expect = 2e-59
Identities = 107/209 (51%), Positives = 147/209 (70%)
Frame = +2
Query: 218 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQP 397
M+ +GL+KQ NKANQY++E MG AE TKLD F EME+ D T L+ +L T E+LQP
Sbjct: 1 MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEKNVDTTYNLITDLVAGTNEYLQP 60
Query: 398 NPTARAKMAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEA 577
NP RAKMA +SK+ G K++ YPQ EG+L D M YG++LG+++ + L + E
Sbjct: 61 NPATRAKMATQVALSKVRGTTKTSPYPQTEGMLADVMQKYGQQLGDNSDLGKSLNDAAET 120
Query: 578 LKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGSH 757
+QMAD+KY ++DN+KQ+FL+PL HLQ +LK+V HHR KL+GRRLD+DCK+R+Q +
Sbjct: 121 YRQMADIKYQMEDNVKQNFLDPLTHLQNNELKDVNHHRTKLKGRRLDYDCKKRQQRR--- 177
Query: 758 IPDDEIXQAEXKFAESLQLAQVGMFIFLT 844
DDE+ QAE K ES +LA++ MF L+
Sbjct: 178 --DDEMIQAEEKLEESKRLAEMSMFNVLS 204
>AF067617-1|ABQ13063.1| 379|Caenorhabditis elegans Uncoordinated
protein 57, isoform c protein.
Length = 379
Score = 225 bits (551), Expect = 2e-59
Identities = 107/209 (51%), Positives = 147/209 (70%)
Frame = +2
Query: 218 MAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQP 397
M+ +GL+KQ NKANQY++E MG AE TKLD F EME+ D T L+ +L T E+LQP
Sbjct: 1 MSLSGLRKQFNKANQYLSETMGAAEPTKLDDVFNEMEKNVDTTYNLITDLVAGTNEYLQP 60
Query: 398 NPTARAKMAAVKGISKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEA 577
NP RAKMA +SK+ G K++ YPQ EG+L D M YG++LG+++ + L + E
Sbjct: 61 NPATRAKMATQVALSKVRGTTKTSPYPQTEGMLADVMQKYGQQLGDNSDLGKSLNDAAET 120
Query: 578 LKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFDCKRRRQAKGSH 757
+QMAD+KY ++DN+KQ+FL+PL HLQ +LK+V HHR KL+GRRLD+DCK+R+Q +
Sbjct: 121 YRQMADIKYQMEDNVKQNFLDPLTHLQNNELKDVNHHRTKLKGRRLDYDCKKRQQRR--- 177
Query: 758 IPDDEIXQAEXKFAESLQLAQVGMFIFLT 844
DDE+ QAE K ES +LA++ MF L+
Sbjct: 178 --DDEMIQAEEKLEESKRLAEMSMFNVLS 204
>U46675-5|AAL32215.1| 281|Caenorhabditis elegans Endophilin-related
protein protein1, isoform b protein.
Length = 281
Score = 68.9 bits (161), Expect = 4e-12
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
Frame = +2
Query: 248 NKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAA 427
++A Q E AE T+LD F + ++ D T + L + + +LQPNPT R +
Sbjct: 17 SRAKQLTEETFLKAERTELDSHFENLLQRADKTEDHTRRLLSAIEGYLQPNPTVRMEEVF 76
Query: 428 VKGIS-KLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMADVKY 604
+ + K G + N Q L M G++ GE T + L+++ + ++ +
Sbjct: 77 YEKLELKKDGAIRQNNLEQ----LSTAMTEAGEQFGETTPYGSALLKVAQTENRLGQAER 132
Query: 605 SLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFD-CKRR-RQAK 748
L + L P+ D+K + RK L +RLD D CK R ++AK
Sbjct: 133 ELCGQAATNTLLPIRRFLEGDMKTIQKERKVLNSKRLDLDACKSRLKKAK 182
>U46675-4|AAB52640.1| 366|Caenorhabditis elegans Endophilin-related
protein protein1, isoform a protein.
Length = 366
Score = 68.9 bits (161), Expect = 4e-12
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
Frame = +2
Query: 248 NKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAA 427
++A Q E AE T+LD F + ++ D T + L + + +LQPNPT R +
Sbjct: 17 SRAKQLTEETFLKAERTELDSHFENLLQRADKTEDHTRRLLSAIEGYLQPNPTVRMEEVF 76
Query: 428 VKGIS-KLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMADVKY 604
+ + K G + N Q L M G++ GE T + L+++ + ++ +
Sbjct: 77 YEKLELKKDGAIRQNNLEQ----LSTAMTEAGEQFGETTPYGSALLKVAQTENRLGQAER 132
Query: 605 SLDDNIKQSFLEPLHHLQTKDLKEVMHHRKKLQGRRLDFD-CKRR-RQAK 748
L + L P+ D+K + RK L +RLD D CK R ++AK
Sbjct: 133 ELCGQAATNTLLPIRRFLEGDMKTIQKERKVLNSKRLDLDACKSRLKKAK 182
>AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical
protein Y87G2A.12 protein.
Length = 791
Score = 36.3 bits (80), Expect = 0.029
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +2
Query: 209 QVNMAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTKEF 388
Q+N+A L+KQIN+ANQ V E G T + + + DV E+ E+ T+
Sbjct: 8 QLNIARKKLQKQINQANQLVNEVNNGLNSTDNENIYDTITEAADVAREIQSEMNRITQYM 67
Query: 389 LQPN 400
Q N
Sbjct: 68 KQWN 71
>AF016676-1|AAG24103.1| 598|Caenorhabditis elegans Hypothetical
protein F41B5.6 protein.
Length = 598
Score = 35.1 bits (77), Expect = 0.066
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 203 NIQVNMAFAGLKKQINKANQYVTEKMGGAEGTKLDLDFVEMERKTDVTCELVEELQTKTK 382
N Q+N+A ++KQIN+A Q V E G T + + + DV E+ E+ T+
Sbjct: 6 NAQLNIARKKIQKQINQAKQLVNEFNNGLNSTDNENIYDTITEVADVATEIQSEMNRITQ 65
Query: 383 EFLQPN 400
Q N
Sbjct: 66 YMKQWN 71
>U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical
protein T04C9.1b protein.
Length = 863
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 533 EDTIFSQCLIEMGEALKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRK 694
++ + CL E G + Q+ D + L ++S+LEP+ +T+ + + K
Sbjct: 79 DERFIATCLKEFGSLINQVEDERMKLVGQAEESYLEPIKKFRTEAIGRTLKEEK 132
>U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical
protein T04C9.1a protein.
Length = 881
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 533 EDTIFSQCLIEMGEALKQMADVKYSLDDNIKQSFLEPLHHLQTKDLKEVMHHRK 694
++ + CL E G + Q+ D + L ++S+LEP+ +T+ + + K
Sbjct: 79 DERFIATCLKEFGSLINQVEDERMKLVGQAEESYLEPIKKFRTEAIGRTLKEEK 132
>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
transferase protein.
Length = 1151
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 479 QPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMAD 595
Q +G L D +LHY + + F+ MG LK+M D
Sbjct: 476 QQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGD 514
>U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform b protein.
Length = 973
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 479 QPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMAD 595
Q +G L D +LHY + + F+ MG LK+M D
Sbjct: 298 QQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGD 336
>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform a protein.
Length = 1151
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 479 QPEGVLGDCMLHYGKKLGEDTIFSQCLIEMGEALKQMAD 595
Q +G L D +LHY + + F+ MG LK+M D
Sbjct: 476 QQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGD 514
>U64858-6|AAB18283.2| 392|Caenorhabditis elegans Hypothetical
protein C16D9.5 protein.
Length = 392
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 299 KLDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGISKLSGQAKSNTYP 478
+L + +++ T + ++ TKT P P A+ + ISK +G++ + Y
Sbjct: 40 RLAIQTEQLQETTRIASRVISTSSTKTPHVATPPPAAKVEPVDCNCISKTTGKSYNFCYT 99
Query: 479 QPE 487
P+
Sbjct: 100 DPQ 102
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -2
Query: 393 CRNSLVFVCNSSTNSHVTSV-FLSISTKSKSNFVPSAPP--IFSVTY*LALLICFFN 232
CRNSL + +++ N H + F+S+ T + N V S P +++ + + L+I F N
Sbjct: 242 CRNSLDLISDTTNNPHRVKISFISV-TPDEENAVVSLIPLLVYAASISIVLVITFLN 297
>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
protein R03D7.1 protein.
Length = 1249
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Frame = +2
Query: 359 EELQTKTKEFLQPNPTARAKMAAVKGISKL----SGQAKSNT--YPQP----EGVLGDCM 508
++ TKT E+ R K A VKG+ + + +A+ NT YP+P E L D M
Sbjct: 647 KKADTKTDEWRSLTVEERLKFALVKGVDQFVVADTEEARQNTAKYPRPLNVIERPLMDGM 706
Query: 509 LHYGKKLGEDTIFSQCLIEMGEALKQ 586
G+ G +F +I+ +K+
Sbjct: 707 AVVGELFGAGKMFLPQVIKSARVMKK 732
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
protein F54F2.1 protein.
Length = 1226
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +1
Query: 244 N*QSQSVCHRENGWRGRHKIGFGLRG-----NGKKNRRNV*IG 357
N + S C +E GRH++G+G G GKKN+ V IG
Sbjct: 168 NAEEFSSCKQEPARHGRHRLGYGQCGFSAAVPGKKNQNRVFIG 210
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 671 SNPWSASDAEVPKNFA 624
+NPW SDAE KNFA
Sbjct: 2 TNPWEVSDAEYQKNFA 17
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
protein F44E2.4 protein.
Length = 1283
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 542 IFSQCLIEMGEALKQMADVKYSLDDNIKQSF 634
+ S C++E G + Q++D ++DDN+ F
Sbjct: 885 VVSSCMVEAGRGICQLSDPAKAIDDNLSCLF 915
>U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln
(neuronal ceroid lipofuscinosis)related protein 3.2
protein.
Length = 435
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 477 G*VLLFACPLSLLIPLTAAIFALAVGFGCRNSLVFVCNSST 355
G VLL +LLI +TA +F V FG R+S+V + +S+
Sbjct: 66 GSVLLADIIPALLIKITAPMFIHRVPFGIRHSIVVLLQASS 106
>AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein.
Length = 435
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 477 G*VLLFACPLSLLIPLTAAIFALAVGFGCRNSLVFVCNSST 355
G VLL +LLI +TA +F V FG R+S+V + +S+
Sbjct: 66 GSVLLADIIPALLIKITAPMFIHRVPFGIRHSIVVLLQASS 106
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 392 QPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGV 493
+PNP A ++ +KG S L+ +A+ N Y +PE V
Sbjct: 31 EPNPNANLEV--LKGHSNLAKRAQPNYYTRPEQV 62
>Z66566-2|CAA91485.1| 537|Caenorhabditis elegans Hypothetical
protein T25C12.1b protein.
Length = 537
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 TEKMGGAEGTK---LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGI 439
T K GG E ++ D V++ R D++ E + + + + +PT R + + I
Sbjct: 278 TAKAGGPERKPRKPVNDDIVKIVRNQDLSEENISMFEIPVPKAIASDPTFRP--VSEQQI 335
Query: 440 SKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLI 562
+ Q K Y + E +G+CM+ KKL E +F L+
Sbjct: 336 IQQIIQGKK--YEEME--VGECMIQLCKKLAEKRVFGPRLM 372
>Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical
protein T25C12.1a protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 TEKMGGAEGTK---LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGI 439
T K GG E ++ D V++ R D++ E + + + + +PT R + + I
Sbjct: 256 TAKAGGPERKPRKPVNDDIVKIVRNQDLSEENISMFEIPVPKAIASDPTFRP--VSEQQI 313
Query: 440 SKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLI 562
+ Q K Y + E +G+CM+ KKL E +F L+
Sbjct: 314 IQQIIQGKK--YEEME--VGECMIQLCKKLAEKRVFGPRLM 350
>X60233-1|CAA42793.1| 537|Caenorhabditis elegans LIN-14A protein.
Length = 537
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 TEKMGGAEGTK---LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGI 439
T K GG E ++ D V++ R D++ E + + + + +PT R + + I
Sbjct: 278 TAKAGGPERKPRKPVNDDIVKIVRNQDLSEENISMFEIPVPKAIASDPTFRP--VSEQQI 335
Query: 440 SKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLI 562
+ Q K Y + E +G+CM+ KKL E +F L+
Sbjct: 336 IQQIIQGKK--YEEME--VGECMIQLCKKLAEKRVFGPRLM 372
>X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 TEKMGGAEGTK---LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGI 439
T K GG E ++ D V++ R D++ E + + + + +PT R + + I
Sbjct: 256 TAKAGGPERKPRKPVNDDIVKIVRNQDLSEENISMFEIPVPKAIASDPTFRP--VSEQQI 313
Query: 440 SKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLI 562
+ Q K Y + E +G+CM+ KKL E +F L+
Sbjct: 314 IQQIIQGKK--YEEME--VGECMIQLCKKLAEKRVFGPRLM 350
>X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 269 TEKMGGAEGTK---LDLDFVEMERKTDVTCELVEELQTKTKEFLQPNPTARAKMAAVKGI 439
T K GG E ++ D V++ R D++ E + + + + +PT R + + I
Sbjct: 280 TAKAGGPERKPRKPVNDDIVKIVRNQDLSEENISMFEIPVPKAIASDPTFRP--VSEQQI 337
Query: 440 SKLSGQAKSNTYPQPEGVLGDCMLHYGKKLGEDTIFSQCLI 562
+ Q K Y + E +G+CM+ KKL E +F L+
Sbjct: 338 IQQIIQGKK--YEEME--VGECMIQLCKKLAEKRVFGPRLM 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,311,623
Number of Sequences: 27780
Number of extensions: 442547
Number of successful extensions: 1375
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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