Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L08
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   0.63 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.5  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   4.4  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   4.4  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   7.7  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   7.7  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 335 SSFEIGEPLYPAHANVPDSSYDFIIVGGGSAGCVLANR 448
           +  EI + LY A A+  +  YD  ++GGG  G V A R
Sbjct: 27  AQIEISKRLYSAKAS-GNGEYDLCVIGGGPGGYVAAIR 63


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 386 DSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 496
           D  YD I++G G   CVL+  L  V    VL I+  D
Sbjct: 2   DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 677 VRGNRADYDNWAENGNEGWD----WNTVIQYFKKSERLD 781
           V GN AD  +W  +G   WD    +  V+ + KK + LD
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLD 148


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 506 SIANSPGYSLITSTLLPNWGYFG 574
           SIANSP  SL+T  L P +   G
Sbjct: 390 SIANSPSVSLLTKVLHPKYHLIG 412


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 395 YDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 490
           +D++++GGGS G   A R  +     V +IEA
Sbjct: 8   FDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 204 LAQSNLYSAFGIYVLKIKNKLN*C 133
           ++  N+  + G+YV KIK KL  C
Sbjct: 358 ISSRNIIDSLGLYVNKIKEKLQIC 381


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 446 RLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTL 550
           +L E+ N+   ++E  DDPP I  +P +   TSTL
Sbjct: 794 KLEEIENY---IMENKDDPPEIYAAPVFKNKTSTL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,854
Number of Sequences: 5004
Number of extensions: 66665
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)