Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L08
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 33 0.22
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06) 31 0.89
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 30 2.1
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41) 29 3.6
SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10) 29 6.3
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 29 6.3
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 29 6.3
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 8.3
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 90.2 bits (214), Expect = 2e-18
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Frame = +2
Query: 389 SSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTLLPNWGY 568
S +D++I G GSAGCVLANRL+ + VL++EAG + +LI + + +
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNW 221
Query: 569 FGVNDDFSSQGQKFKSIRHT---RGKMLGGSSSLNSMFYVRGNRADYDNWAENGNEGWDW 739
+ + + QK + R RG++ GGSSSLN+M Y+RG+ DYD W G +GW +
Sbjct: 222 Y-----YHTAPQKHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSY 276
Query: 740 NTVIQYFKKSE 772
+ YF+KS+
Sbjct: 277 ADCLPYFRKSQ 287
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 55.2 bits (127), Expect = 6e-08
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +2
Query: 383 PDSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTLLPNW 562
P YDFII GGG+AGC+LANRLT VLM+EAG + S+ S + P+W
Sbjct: 7 PLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAGFSKLLVNPDW 66
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 470 SVLMIEAGDDPPSIANSPGYSLITSTLLPNWGYFGVNDDFSSQGQKFKSIRHTRGKMLG 646
+VL+ +A PP A GYS T +LLPN Y +ND + + K +LG
Sbjct: 1320 NVLIGQADKIPPVCAVLAGYSRATISLLPNAAY--INDGYDDENNDVKQFGQLLAVLLG 1376
>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
Length = 410
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 383 PDSSYDFIIVGGGSAGCVLANRLTEVANWSVL 478
P + ++ IIVGGG AG LA +L + N +++
Sbjct: 43 PKNDFNVIIVGGGYAGITLAGKLDDYCNVTLI 74
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 392 SYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 490
+YD++++GGGS G A R E +V++ A
Sbjct: 50 AYDYVVIGGGSGGIASARRAAEFGVKAVVIEHA 82
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 398 DFIIVGGGSAGCVLANRLTEVANW-SVLMIEAGD 496
D II+G G +G + AN LTE + VL++EA D
Sbjct: 2108 DVIIIGAGVSGLIAANVLTEQDQYIKVLVLEACD 2141
>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 674 YVRGNRADYDNWAENGNEGWDWNTVIQY 757
YV+ +R Y W GN WDW QY
Sbjct: 64 YVQAHRRAYLAWYYYGNGNWDWELDNQY 91
>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
Length = 264
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 386 DSSYDFIIVGGGSAGCVLANRLTE 457
+S YD IIVGGG+AG A + E
Sbjct: 2 NSKYDIIIVGGGAAGFFTAINIAE 25
>SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 407 IVGGGSAGCVLANRLTEVANWSVLMIE 487
++GGG GC A +L + N++V ++E
Sbjct: 21 VIGGGIGGCCSALQLAKTGNYTVFLLE 47
>SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10)
Length = 325
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 650 SSSLNSMFYVRGNRADYDNWAENGNEGWDWNTVIQYFKKS--ERLDDNHIMSSE 805
+ L S Y N+ W E +G+DW I+Y K+ + DD + E
Sbjct: 76 AKELVSADYTPSNQEAVKLWKEKDPKGFDWRPFIEYVVKNLEGKCDDQEVTQRE 129
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 295 TNIRSDTAANNRSIV-FRNWRASVPCSRQRARFELRLHNRGRRISRLRTS*QTHRSRQLV 471
T RS + +RS R+W + SR R R H R R SR+R+ ++
Sbjct: 412 TKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSRSRIRSRSRSQELDSRT 471
Query: 472 CADDRSWRRPSKHS 513
+S+ R S+ S
Sbjct: 472 LRSKKSFERRSRAS 485
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 395 YDFIIVGGGSAGCVLANRLTEVANW 469
YD I++GGGS G A NW
Sbjct: 669 YDLIVIGGGSGGLACAKNHIGSLNW 693
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 641 LGGSSSLNSMFYVRGNRADYDN-WAENGNEGWDW 739
+ G S++ S+ NRA W++ GN+G DW
Sbjct: 88 MNGGSAVGSLNVYLANRASLSLVWSKTGNQGSDW 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,233,022
Number of Sequences: 59808
Number of extensions: 479281
Number of successful extensions: 1175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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