Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L08
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   124   1e-30
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  124 bits (298), Expect = 1e-30
 Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
 Frame = +2

Query: 347 IGEPLYPAHAN-VPDSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSP 523
           IGEP    H++ +PD SYDFI+VGGG+A  V+A RL+EV+NW VL++EAG D P+ A  P
Sbjct: 52  IGEPCQRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIP 111

Query: 524 GYSLITSTLLPNWGYFGVNDDFSSQGQKFKSIRHTRGKMLGGSSSLNSMFYVRGNRADYD 703
               +      +W Y+  N+  +       S    RGK LGG++  + M Y RG+R DY+
Sbjct: 112 SNLQLYLGGDLDWKYYTTNESHACLSTG-GSCYWPRGKNLGGTTLHHGMAYHRGHRKDYE 170

Query: 704 NWAENGNEGWDWNTVIQYFKKSERLDDNHIMSSESAXLHGNKGYLGV 844
            W + G  GW W+ V+ Y+ KSE   +N  +S      H + G + V
Sbjct: 171 RWVQQGAFGWSWDEVMPYYLKSE---NNTELSRVGTKYHRSGGLMNV 214


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 654 VPSTLCFTSEGTGLITTIGPKTETKAGTGIRSFSTLRK 767
           +P+T+  T+  T   T     T T   TG+    TL++
Sbjct: 103 LPATITTTTTTTTTTTATAAATATTTATGLIKQETLQR 140


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +2

Query: 188 KFDWASATVLKGAKTFECVLIMFFQAIALF 277
           ++ W   +VL G   F C+ +++   + +F
Sbjct: 387 QYTWRHTSVLIGWSAFLCISLVYIIMLIIF 416


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 348 LESLCTLLTPTCQIRVT 398
           ++++CT LT  CQ  VT
Sbjct: 641 MDAICTKLTADCQPGVT 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,737
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)