Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L07
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56925| Best HMM Match : RVP (HMM E-Value=2.3) 31 1.1
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_44556| Best HMM Match : RVP (HMM E-Value=2.3) 31 1.1
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 31 1.1
SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 31 1.1
SB_7574| Best HMM Match : RVP (HMM E-Value=2.3) 31 1.1
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 31 1.1
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 31 1.1
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 30 1.9
SB_46234| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.7) 28 7.6
>SB_56925| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 226
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 93 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 152
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 153 MIRLSTATRLGCNITTSSQSVS 174
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 264 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 323
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 324 MIRLSTATRLGCNITTSSQSVS 345
>SB_44556| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 305
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 172 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 231
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 232 MIRLSTATRLGCNITTSSQSVS 253
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 20 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 79
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 80 MIRLSTATRLGCNITTSSQSVS 101
>SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 14 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 73
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 74 MIRLSTATRLGCNITTSSQSVS 95
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 276 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 335
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 336 MIRLSTATRLGCNITTSSQSVS 357
>SB_7574| Best HMM Match : RVP (HMM E-Value=2.3)
Length = 253
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 120 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 179
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 180 MIRLSTATRLGCNITTSSQSVS 201
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 172 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 231
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 232 MIRLSTATRLGCNITTSSQSVS 253
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 285 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 344
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 345 MIRLSTATRLGCNITTSSQSVS 366
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 322 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRVTVDSGATGN 381
Query: 435 ML-TTYASALGIGALVSQNDIS 497
M+ + A+ LG S +S
Sbjct: 382 MIRLSTATRLGCNITTSSQSVS 403
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 306 EPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMML-TTYASALGIGALVS 482
+PP HD ++ SP+L ++ T +++ ATG M+ + A+ LG S
Sbjct: 292 DPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGNMIRLSTATRLGCNITTS 351
Query: 483 QNDIS 497
+S
Sbjct: 352 SQSVS 356
>SB_46234| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.7)
Length = 271
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 NYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGM 434
N ++ ++A + +PP HD ++ SP+L ++ T +++ ATG
Sbjct: 192 NDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGN 251
Query: 435 ML-TTYASALGIGALVS 482
M+ + A+ LG S
Sbjct: 252 MIRLSTATRLGCNITTS 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,780
Number of Sequences: 59808
Number of extensions: 431357
Number of successful extensions: 945
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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