Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L07
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein... 107 5e-23
D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subuni... 107 5e-23
CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein. 107 5e-23
BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase... 107 5e-23
BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase... 107 5e-23
BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase... 107 5e-23
AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase... 107 5e-23
AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase... 107 5e-23
AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane prote... 88 3e-17
AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase... 88 3e-17
AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase... 83 1e-15
AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase... 47 7e-05
>U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein
CII-3 protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subunit
of complex II protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase
subunit C protein.
Length = 169
Score = 107 bits (257), Expect = 5e-23
Identities = 49/109 (44%), Positives = 67/109 (61%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMI 515
+N NRPLSPH+TIYS+ L +SI HR TG+ L+ S G+ AL+ + Y+ ++
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 516 EGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ L L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane protein
CII-3b protein.
Length = 135
Score = 88.2 bits (209), Expect = 3e-17
Identities = 42/105 (40%), Positives = 59/105 (56%)
Frame = +3
Query: 348 LNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLN 527
L SP L I ++ L +SI HR TG+ L+ S G+ AL+ + Y+ +++ L
Sbjct: 14 LRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLC 73
Query: 528 LSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 74 LGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase
complex, subunit C delta3 alternative splicing variant
protein.
Length = 135
Score = 88.2 bits (209), Expect = 3e-17
Identities = 42/105 (40%), Positives = 59/105 (56%)
Frame = +3
Query: 348 LNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLN 527
L SP L I ++ L +SI HR TG+ L+ S G+ AL+ + Y+ +++ L
Sbjct: 14 LRAHFSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLC 73
Query: 528 LSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
L PA + AK + PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 74 LGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase
complex, subunit C delta2+3 alternative splicing varian
protein.
Length = 116
Score = 83.0 bits (196), Expect = 1e-15
Identities = 38/95 (40%), Positives = 55/95 (57%)
Frame = +3
Query: 378 IYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAK 557
+ S+ L +SI HR TG+ L+ S G+ AL+ + Y+ +++ L L PA + AK
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 64
Query: 558 VIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTG 662
+ PL YH NGIRHL WD KGL I ++Y +G
Sbjct: 65 FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 99
>AB211235-1|BAE46979.1| 150|Homo sapiens succinate dehydrogenase
complex, subunit C delta5 alternative splicing variant
protein.
Length = 150
Score = 47.2 bits (107), Expect = 7e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +3
Query: 336 RNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLT 443
+N NRPLSPH+TIYS+ L +SI HR TG+ L+
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALS 79
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,402,767
Number of Sequences: 237096
Number of extensions: 2114816
Number of successful extensions: 3405
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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