Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L04
         (840 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   7.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   7.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   9.2  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 807 CKPXICYLPTC 839
           C P +C LP C
Sbjct: 163 CDPAVCVLPDC 173



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 2   GNFRFVIAISCKLELKYLF*NSVNLGTC 85
           GN    +  SCKL  K +   ++NL TC
Sbjct: 488 GNPHCWVPHSCKLTSKEVPGETINLQTC 515


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 690 RFLDFLDLGVQATNVSIGFLWSLFKL 613
           +++  +DLG  A  V  G L + FKL
Sbjct: 83  KYIILIDLGEVAVTVLAGILTTPFKL 108


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 586 HHPKHQQLRAPYDS 545
           HH  H Q R P DS
Sbjct: 53  HHHHHLQARPPQDS 66


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 631 VEPFQAS*LTPWDPCHHPKHQ 569
           V+P       P D  HHP HQ
Sbjct: 28  VQPLPRHFNPPSDKLHHPIHQ 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,263
Number of Sequences: 336
Number of extensions: 3684
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)