Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L04
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 373 e-104
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 170 2e-43
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 139 4e-34
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 132 6e-32
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 126 5e-30
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 121 1e-28
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 94 2e-20
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 87 3e-18
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 83 6e-17
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 77 3e-15
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 76 5e-15
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 74 2e-14
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 73 4e-14
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 70 4e-13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 69 1e-12
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 67 3e-12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 64 2e-11
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 60 3e-10
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 55 1e-08
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 50 4e-07
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 8e-04
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 32 0.12
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.15
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.27
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.36
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.36
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 30 0.47
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.62
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.62
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.82
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 1.1
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 2.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 2.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.3
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.3
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 3.3
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 4.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.8
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 7.6
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 7.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.6
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 373 bits (917), Expect = e-104
Identities = 173/227 (76%), Positives = 208/227 (91%), Gaps = 1/227 (0%)
Frame = +1
Query: 163 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 339
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 340 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 519
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 520 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVEL 699
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KAP E+YADIGGL++QIQEIKE+VEL
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
Query: 700 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXTSATFLRV 840
PLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRV
Sbjct: 210 PLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRV 256
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 170 bits (413), Expect = 2e-43
Identities = 82/186 (44%), Positives = 125/186 (67%)
Frame = +1
Query: 283 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 462
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 463 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 642
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ P +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 643 ADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXTS 822
AD+GGLD Q QE++E+VELPLT + Y ++GI PP+GV+LYGPPGTGKT+L KAVAN T+
Sbjct: 134 ADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTA 193
Query: 823 ATFLRV 840
A F+RV
Sbjct: 194 ANFIRV 199
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 139 bits (337), Expect = 4e-34
Identities = 71/189 (37%), Positives = 112/189 (59%), Gaps = 4/189 (2%)
Frame = +1
Query: 286 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 453
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 454 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 633
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK P
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 634 ETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 813
TY +GGL+ QI+EIKE +ELP+ HPE +E +GI PKG++LYGPPGTGKTLLA+AVA+
Sbjct: 142 STYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAH 201
Query: 814 XTSATFLRV 840
T F+RV
Sbjct: 202 HTDCKFIRV 210
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 132 bits (319), Expect = 6e-32
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 4/190 (2%)
Frame = +1
Query: 283 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 450
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 451 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 630
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 631 QETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 810
++A +GGL+ QI+E++E +ELPL +PE + +GIKPPKGV+LYGPPGTGKTLLA+AVA
Sbjct: 128 DISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVA 187
Query: 811 NXTSATFLRV 840
FL+V
Sbjct: 188 ASLGVNFLKV 197
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 126 bits (303), Expect = 5e-30
Identities = 66/202 (32%), Positives = 113/202 (55%), Gaps = 21/202 (10%)
Frame = +1
Query: 298 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 441
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 442 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 594
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 595 PMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPP 774
V M++++ P E Y+DIGGL QI+E+ E++ LP+ + + ++G+KPPKG +++GPP
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPP 228
Query: 775 GTGKTLLAKAVANXTSATFLRV 840
GTGKTLLA+A A ++ATFL++
Sbjct: 229 GTGKTLLARACAAQSNATFLKL 250
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 121 bits (292), Expect = 1e-28
Identities = 59/138 (42%), Positives = 87/138 (63%)
Frame = +1
Query: 427 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 606
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 607 VMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 786
+M++E+ P TY D+GG QI+ ++E VELPL PE + ++GI PPKG++LYGPPGTGK
Sbjct: 167 MMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGK 226
Query: 787 TLLAKAVANXTSATFLRV 840
TL A+AVAN T ATF+RV
Sbjct: 227 TLCARAVANRTDATFIRV 244
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 94.3 bits (224), Expect = 2e-20
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +1
Query: 640 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXT 819
Y DIGG Q+ +I+E VELPL HP+ ++ +GIKPP+G+++YGPPGTGKTL+A+AVAN T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 820 SATFLRV 840
A F +
Sbjct: 283 GAFFFLI 289
Score = 83.4 bits (197), Expect = 4e-17
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Frame = +1
Query: 421 NLEEIIDDNHAIVSTSVGS-------EHYVSILSFVDKDQLEPGCSVL--LNHKVHAVVG 573
+LE+I + H V + + S + + +D D+ E VL L +
Sbjct: 415 DLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRF 474
Query: 574 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKG 753
LG ++P + + P + DIGGL+ +E++E+V++P+ + E + G+ P KG
Sbjct: 475 ALGS-SNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKG 533
Query: 754 VILYGPPGTGKTLLAKAVANXTSATFLRV 840
V+ +GPPGTGKTLLAKA+AN SA F+ V
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISV 562
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 87.0 bits (206), Expect = 3e-18
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = +1
Query: 622 KAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 801
++P ++DIGG + Q++KESVE PLTH E + +G++PPKGV+LYGPPG KT+ AK
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 802 AVANXTSATFLRV 840
A+A T F+ V
Sbjct: 601 AIATETGLNFIAV 613
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = +1
Query: 637 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANX 816
T++ IGGL QI +I++ VELP +PE ++ I PP+GV+LYGPPGTGKT++ +AVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 817 TSA 825
+A
Sbjct: 337 ANA 339
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 82.6 bits (195), Expect = 6e-17
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +1
Query: 643 ADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXTS 822
+DIGGLD I E+ E V +P+ HPE Y+ GI PP+GV+L+GPPG GKT+LA A+AN
Sbjct: 174 SDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELG 233
Query: 823 ATFLRV 840
F+ +
Sbjct: 234 VPFISI 239
Score = 72.1 bits (169), Expect = 9e-14
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +1
Query: 628 PQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 807
P ++ +IG L + E++ ++ P+ PE Y+ +GI P GV+L+GPPG GKTLLAKAV
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546
Query: 808 ANXTSATFLRV 840
AN + A F+ +
Sbjct: 547 ANESKANFISI 557
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 77.0 bits (181), Expect = 3e-15
Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Frame = +1
Query: 586 DTDPMVSVMKLEKA------PQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPP 747
D D ++ ++ EK+ P+ + DIGGL+ ++++++LPL PE + + G+KP
Sbjct: 630 DVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPR 688
Query: 748 KGVILYGPPGTGKTLLAKAVANXTSATFLRV 840
GV+LYGPPGTGKTLLAKAVA S F+ +
Sbjct: 689 SGVLLYGPPGTGKTLLAKAVATELSLEFVSI 719
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 76.2 bits (179), Expect = 5e-15
Identities = 30/63 (47%), Positives = 47/63 (74%)
Frame = +1
Query: 637 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANX 816
++ +GGLD I ++KE V LPL +PE ++ ++PP+GV+ +GPPGTGKTL+A+A+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAA 323
Query: 817 TSA 825
S+
Sbjct: 324 CSS 326
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 74.1 bits (174), Expect = 2e-14
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Frame = +1
Query: 637 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVA 810
++ DIGG+D + ++ + V PL +PE ++ G + PKG++LYGPPG GKT+LAKA+A
Sbjct: 87 SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALA 146
Query: 811 NXTSATFLRV 840
+ ATF+ V
Sbjct: 147 KQSQATFINV 156
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 73.3 bits (172), Expect = 4e-14
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = +1
Query: 640 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXT 819
+AD+ G+D +EI E V+ L +P++YE +G K P+G IL GPPGTGKTLLAKA A
Sbjct: 295 FADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEA 353
Query: 820 SATFLRV 840
+ FL V
Sbjct: 354 NVPFLSV 360
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 70.1 bits (164), Expect = 4e-13
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 598 MVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG 777
+ S + +EK P + DI GL+ + +KE+V LP+ P+ + G KP G++LYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 778 TGKTLLAKAVANXTSATFLRV 840
TGK+ LAKAVA +TF +
Sbjct: 173 TGKSYLAKAVATEAGSTFFSI 193
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 68.5 bits (160), Expect = 1e-12
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Frame = +1
Query: 172 PIPTRVGKKKRKAKGP----DAALKLPQVTPHTRC-------RLKLLKLERIKDYLLMEE 318
PIP+R G++KRK +GP L++ + R R KL + +Y L +
Sbjct: 208 PIPSRRGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNRPNYHLF-D 266
Query: 319 EFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSIL 498
+ P KI K+ + +G + D + +S SE +
Sbjct: 267 YYNEIASSPNPSTTKITYNPPKLPMKDFATLPIG-YQSTCDSDETSELSSTSSEQTSDVE 325
Query: 499 SFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQE 678
+ L G S + + + + D + S + IGGL+ I +
Sbjct: 326 GLNAYNNL--GASSDIENAPSSQLHFGHIDEKTIRSTDPFANRENLDFNSIGGLEDIILQ 383
Query: 679 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 810
+KE V LPL +PE + + I PP+GV+ +GPPGTGKTL+A+ +A
Sbjct: 384 LKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +1
Query: 640 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXT 819
++DI GLD +KE+V P PE ++ + +P +G++L+GPPGTGKT+LA+AVA
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEA 436
Query: 820 SATFLRV 840
ATF +
Sbjct: 437 KATFFSI 443
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +1
Query: 619 EKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA 798
E+A ++D+ G+D +E++E V+ L P ++ +G K P+GV+L GPPGTGKT+LA
Sbjct: 259 ERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLA 317
Query: 799 KAVANXTSATF 831
+AVA + F
Sbjct: 318 RAVAGEANVPF 328
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 60.5 bits (140), Expect = 3e-10
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +1
Query: 646 DIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXTSA 825
DI GL+ +KE+V P P+ ++ + +P +G++L+GPPGTGKT+LA+AVA + +
Sbjct: 460 DISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATESRS 518
Query: 826 TFLRV 840
F +
Sbjct: 519 VFFSI 523
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 649 IGGLDTQIQEI-KESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXTSA 825
IGGLD++ I + + L P E++GI KG++LYGPPGTGKTL+A+ + +A
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 50.0 bits (114), Expect = 4e-07
Identities = 19/67 (28%), Positives = 40/67 (59%)
Frame = +1
Query: 640 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANXT 819
+ DI G+ + +++ +E P+ + Y++ ++ P G++L+G PG GKT LA A+++
Sbjct: 605 WIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTF 664
Query: 820 SATFLRV 840
F+ +
Sbjct: 665 PVQFISI 671
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 658 LDTQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 810
L++ +++ I + V L + ++Y+ GI +G +LYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 754 VILYGPPGTGKTLLAKAVANXTSATFLRV 840
+IL+G GTGKT LA+ +A T + F+ +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEI 151
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 733 GIKPPKGVILYGPPGTGKTLLAKAVANXTSATFLR 837
G K + L GPPG GKT + K++A+ + F R
Sbjct: 567 GTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.27
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 265 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 444
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 754 VILYGPPGTGKTLLAKAVANXT 819
+I+ G PGTGKT LA+ VA T
Sbjct: 11 IIICGTPGTGKTTLAEQVAETT 32
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 739 KPPKGVILYGPPGTGKTLLAKAVAN 813
+P + GP GTGKTLL KA+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.9 bits (64), Expect = 0.47
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 742 PPKGVILYGPPGTGKTLLAKAVANXTS 822
PP V + GPPGTGK+ L K++ S
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVRRYS 99
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 748 KGVILYGPPGTGKTLLAKAVANXTSATFLRV 840
K ++L G PG GKT L A+A T +R+
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRI 1590
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 754 VILYGPPGTGKTLLAKAVANXTSATFLRV 840
+++ GP +GKT + + VA T F+R+
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRI 925
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 250 PHTRCRLKLLKLERIKDYLLM 312
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.1 bits (62), Expect = 0.82
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 748 KGVILYGPPGTGKTLLAKAVA 810
K V+L GPPG GKT A VA
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVA 430
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 748 KGVILYGPPGTGKTLLAKAVA 810
KGV+ G GTGKT LA A+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIA 85
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 745 PKGVILYGPPGTGKTLL 795
PKG+ LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 754 VILYGPPGTGKTLLAKAVA 810
++ YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 313 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 411
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 757 ILYGPPGTGKTLLAKAVA 810
++ GP G+GKT +AKAV+
Sbjct: 18 VVIGPAGSGKTTMAKAVS 35
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 748 KGVILYGPPGTGKTLLAKAVA 810
+ +++ GPP TGKT +A +A
Sbjct: 66 RAILMAGPPSTGKTAIAMGMA 86
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 739 KPPKGVILYGPPGTGKTLLAKAVA 810
+P + GP G GKT L KA+A
Sbjct: 530 RPLASFLFLGPTGVGKTALTKALA 553
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 334 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 510
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 511 KDQLEPGCS 537
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 713 RNTMKKWESNLPKESSCTVLRALVKHSWPRLLQTXH 820
+NT+ E+N P S+ + +L+ S P L T H
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRSLPSLKSTMH 540
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 180 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKGLFVDGRGVHP*SRTLEA-TG 356
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 357 RE 362
R+
Sbjct: 209 RK 210
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.8
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = -2
Query: 791 SVLPVPGGPYKMTPLGGLIPISS*YSGCVRGNSTDSLISWIWVSRPPMSA*VSCGAFSSF 612
S+ P G TP+ +P +S S + T S S S P + SC +S
Sbjct: 177 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSPLPTTSTSCTTSTSI 235
Query: 611 MTDTMGSVSSPKTPTTACT 555
T S+S+P TPT T
Sbjct: 236 PTGGSSSLSTPITPTVPPT 254
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 757 ILYGPPGTGKTLLAKAV 807
++ GPPGTGKT+ + +V
Sbjct: 411 LIQGPPGTGKTVTSASV 427
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 280 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 450
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 451 AI 456
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 235 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 414
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 271 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 387
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,728
Number of Sequences: 5004
Number of extensions: 66468
Number of successful extensions: 291
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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