Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L03
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.3  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    26   7.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   9.3  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 465 GSNYYTDLIDFNNVSSHAKLDSLLTFQ 385
           G NYYT L+  N VSS+  + SL  FQ
Sbjct: 579 GDNYYTILMSSNPVSSYG-VGSLYLFQ 604


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 97  TLGNMLEVRHTKGVPGISLT 156
           T+G++L+++ TKG  GI +T
Sbjct: 133 TVGDVLKIKETKGFSGIPIT 152


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 474 FKFGSNYYTDLIDFNNVSSHAKLDSLLTFQS 382
           F FG   +T  I+F+N    + +  LLTF +
Sbjct: 492 FDFGLCAFTQEIEFSNEKEKSPIQQLLTFNN 522


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 558 SCKVKKMLYKFDKEHQLDLVT*ISDFTEFK 469
           S K KK+  K  K+ QL++V  I+D+++FK
Sbjct: 68  SKKRKKLSSKEKKKLQLNVVPKIADYSQFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,035
Number of Sequences: 5004
Number of extensions: 53070
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)