Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L03
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    29   5.5  
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    29   5.5  

>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 630 N*FITHLVLENTFKKPILNNLKTFSCKVKK--MLYKFDKEHQLD 505
           N    H++LEN   KP+ N+  T   K+++   + K  K+H+ D
Sbjct: 557 NNLFRHIILENNDNKPVTNSRDTQEVKLEQGMEMLKIFKDHEED 600


>03_05_0640 - 26326832-26327166,26327295-26327529,26327665-26327908,
            26328389-26328507,26328860-26329050,26329133-26329220,
            26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 590  LKVFSKTRCVMNQLNIKLIRKFSDSCQEASGEINXKLXSSKIVRTNEAGPGVCTDRRGPX 769
            +K+F+K   + +  N+K I + SD    A G++  ++   +I    EA   +C     P 
Sbjct: 900  IKIFAKVESLESLKNLKDIIEASDGVMVARGDLGVQIPLEQIPAIQEAIVDLCRRLNKPV 959

Query: 770  VL 775
            ++
Sbjct: 960  IV 961


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,896
Number of Sequences: 37544
Number of extensions: 264839
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)