Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L03
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    32   0.40 
U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 545 FTLQLNVFKLFKMGFLKVFSKTRCVMNQLNIKLIRKFSDSCQEA 676
           ++L +     +   FL V S T C+ N LN K+ +K+  +CQ++
Sbjct: 154 YSLAIVATSFYHTVFLLVLSATSCLGNMLNYKINQKYYRACQQS 197


>U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical
           protein F46F11.7 protein.
          Length = 320

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 290 CNFMFHICIQLCSLIFGINWYAAGIYCELQQLWNVSKESNFAC 418
           C+F+ HI  + C  +FG      G  CE +Q +  +K  +  C
Sbjct: 11  CSFILHIAAERCPPVFGEYECPVGFTCEEKQCFGRNKSPSTFC 53


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 464 PNLNSVKSEI*VTKSSWCSLSNLYNIFFTLQLNVFKLFKMGFLKVFSKTRCVMNQL 631
           P+L    +   V  S W  +  L  IF   + NV KL++MGFL  F +   V N L
Sbjct: 568 PHLRYECNSTNVRFSVWRGMLELLQIFHDTRNNVRKLWEMGFLMGFMEFEEVDNML 623


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 464 PNLNSVKSEI*VTKSSWCSLSNLYNIFFTLQLNVFKLFKMGFLKVFSKTRCVMNQL 631
           P+L    +   V  S W  +  L  IF   + NV KL++MGFL  F +   V N L
Sbjct: 568 PHLRYECNSTNVRFSVWRGMLELLQIFHDTRNNVRKLWEMGFLMGFMEFEEVDNML 623


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 464 PNLNSVKSEI*VTKSSWCSLSNLYNIFFTLQLNVFKLFKMGFLKVFSKTRCVMNQL 631
           P+L    +   V  S W  +  L  IF   + NV KL++MGFL  F +   V N L
Sbjct: 568 PHLRYECNSTNVRFSVWRGMLELLQIFHDTRNNVRKLWEMGFLMGFMEFEEVDNML 623


>U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical
           protein C49C8.5 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 483 FTEFKFGSNYYTDLIDFNNVSSHAKLDSLLTFQSCCNSQ 367
           F E   G N++  L + NN+S++ K  S L    CC +Q
Sbjct: 254 FGESGVGKNFWLGLDNMNNLSTNGKTYS-LQIDLCCGTQ 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,645
Number of Sequences: 27780
Number of extensions: 294834
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)