Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L02
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                  110   2e-24
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    31   1.2  
SB_40475| Best HMM Match : Pkinase (HMM E-Value=6.5e-05)               29   6.2  
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   8.2  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score =  110 bits (264), Expect = 2e-24
 Identities = 47/89 (52%), Positives = 65/89 (73%)
 Frame = +2

Query: 44  VMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDH 223
           V++  R+++YGG+GALGA CV++FK+  +WVA++DL PNE+A  N+ V    SW EQ + 
Sbjct: 90  VVSGSRVLIYGGKGALGATCVSYFKAREWWVASVDLFPNEEAHANVIVDPAKSWDEQNNE 149

Query: 224 VVNELGNALQGQKVNAIICVAGGWAGGNA 310
           V  ++   L G K+NAIICVAGGWAGG A
Sbjct: 150 VQKKVDELLDGNKLNAIICVAGGWAGGTA 178



 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 43/64 (67%), Positives = 51/64 (79%)
 Frame = +2

Query: 458 GMIGYGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDTEMNRKWMPKADFSTWTPL 637
           GM+GYGMAKAAVHQLT  LG   + LP +S A+AI+P TLDT MNRK+MP+AD S WTPL
Sbjct: 182 GMLGYGMAKAAVHQLTVGLGMDGNTLPPDSTALAILPNTLDTPMNRKFMPEADQSQWTPL 241

Query: 638 TFVA 649
            +VA
Sbjct: 242 EYVA 245


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 695 HSXDGLHPSSTFQITQPQRSAE 630
           HS DG  PS T+ ITQ ++SAE
Sbjct: 587 HSADGSRPSDTWAITQREKSAE 608


>SB_40475| Best HMM Match : Pkinase (HMM E-Value=6.5e-05)
          Length = 238

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 394 VLKHWWFVGFNWCKSSLRSHPRN 462
           ++KH WF GFNW    LRS   N
Sbjct: 181 IMKHKWFDGFNW--DGLRSRKLN 201


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 2   GRPMSSKL*TREDVVMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNI 181
           GRPM+    +   +  ++G    Y    ALGAA +   +    W+A   L+PN+ A+ +I
Sbjct: 783 GRPMAPPS-SAVGLGTSSGVARRYDAMAALGAAGMVDVQKLAKWIAESHLDPNDPANADI 841


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 554 VAIMPVTLDTEMNRKWMPKADFSTWTPLTFVAELFEKWMKDE 679
           V  MPV+ + E N KW+    F+      FV + F+K  +D+
Sbjct: 67  VQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSRDK 108


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 554  VAIMPVTLDTEMNRKWMPKADFSTWTPLTFVAELFEKWMKDE 679
            V  MPV+ + E N KW+    F+      FV + F+K  +D+
Sbjct: 1338 VQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSRDK 1379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,385,536
Number of Sequences: 59808
Number of extensions: 497846
Number of successful extensions: 1376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)