Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L02
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   252   2e-67
U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  252 bits (617), Expect = 2e-67
 Identities = 119/233 (51%), Positives = 158/233 (67%), Gaps = 2/233 (0%)
 Frame = +2

Query: 47  MATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHV 226
           M++G+++VYGG+GALG+A +  FK   Y V NIDL+ N++AD NI V  + +W EQE  +
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60

Query: 227 VNELGNALQGQKVNAIICVAGGWAGGNAA-KDLSKQADLMWRQSVWSSSIAATLAAKYXX 403
           + +  ++LQG +V+ + CVAGGWAGG+A+ KD  K ADLM +QSVWSS+IAA LA  +  
Sbjct: 61  LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 120

Query: 404 XXXXXXXXXXXXXXXXXPGMIGYGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDT 583
                            P MIGYGMAKAAVH LT SL AKDSGLP+NS  + IMPVTLDT
Sbjct: 121 PGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 180

Query: 584 EMNRKWMPKADFSTWTPLTFVAELFEKWMKD-EGRPXNGSLXALVTKNNVTDL 739
            MNRKWMP AD S+WTPL+F++E   KW  +   RP +G+L  + T+N  + +
Sbjct: 181 PMNRKWMPNADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTENGTSTI 233


>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 578 DTEMNRKWMPKADFSTWTPLTFVAELFEKWMKDEGRPXNGSLXALVT 718
           D ++ ++W     F   T      + F+KW+KD G   N ++   +T
Sbjct: 11  DADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMT 57


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 190 GDSNVKISFFVGIQINVSDPIIKRFKMVHAGSTQCPTTTVHDD 62
           GDSN+ ++ +V   + V D  I      + GS+Q P  T+H +
Sbjct: 237 GDSNIFLASYVSGNLYVYDQRISAASSNNNGSSQPPPWTIHKE 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,539
Number of Sequences: 27780
Number of extensions: 383707
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)