Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L01
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 36 0.011
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 30 0.40
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 29 0.70
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.93
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 1.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.6
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 2.8
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 2.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 5.0
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 6.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 8.7
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 8.7
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 26 8.7
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 35.5 bits (78), Expect = 0.011
Identities = 28/100 (28%), Positives = 50/100 (50%)
Frame = +3
Query: 384 KIAIIENELSELNLYLGKNSRNKRELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEKRE 563
+I+ +ELS + + KN N+ +L S L+ I + EH E I+SLEK +
Sbjct: 835 RISAAADELSSMES-INKNQANELKLAKQKCSNLQEKINFGNKLAKEH-TEKISSLEK-D 891
Query: 564 LDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENIN 683
L+ L T+K+ N+S+ ++ D+Q +++N
Sbjct: 892 LEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVN 931
Score = 32.3 bits (70), Expect = 0.100
Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Frame = +3
Query: 399 ENELSELNLYLGKNSRNKRELFD-----GLSSVLKRLIGTPDAQDAEHYNECINSLEKRE 563
E SE+ ++ ++S+ ++L D G+ S R + + + ++ N + +LE +
Sbjct: 694 EGHESEIKDFIEEHSKLTKQLDDIKNQFGIISSKNRDL-LSELEKSKSLNNSLAALESKN 752
Query: 564 LDV---MNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDIK 734
+ +NL+ ++L ++ ++F +I + ++ +N+N+ I+ KN K
Sbjct: 753 KKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKN-----K 807
Query: 735 ISEEISTISLQILELVTSLENDINDXLT 818
+SEE S ++ EL + L D N T
Sbjct: 808 LSEE----STRLQELQSQLNQDKNQIET 831
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 30.3 bits (65), Expect = 0.40
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 552 EKRELDVMNLMQKQLQ-ITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFD 728
E+R + + N Q Q +T S I N ++ Y +++INE R E N T+
Sbjct: 138 EERNVSLSNNSSGQRQPLTESKISNS-----QLEYQQRLINE---RQGEIENLTQGINEL 189
Query: 729 IKISEEISTISLQILELVTSLENDINDXLTS 821
+I ++STI + ELVT++E ++ + T+
Sbjct: 190 NEIFRDLSTIINEQGELVTNIEYNVGNTSTN 220
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 29.5 bits (63), Expect = 0.70
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Frame = +3
Query: 456 ELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEKRELDVMNLMQKQLQITSSTIKNFNES 635
E+ +G+ R+I + +A ECI + +EL Q + S +K NE+
Sbjct: 124 EIMEGIQKCNSRIIALKQSLEASQ--ECIGNTNSKELQQTLARSSQYKKVISVLKELNEA 181
Query: 636 -----IFKITYDEQIINENINRLNEYINTTKNTVFD-IKISEEISTISLQILELVTSLEN 797
F D + + + + + FD I + E+ + ++ L++ LE+
Sbjct: 182 NQLFDNFHTLVDSKQYYHASDLIRRVWDELSRSDFDGILVVEQFKS---RMTGLLSHLED 238
Query: 798 DINDXLTSILXAKSNTVHPSI 860
+++ L SI K +P +
Sbjct: 239 ILSEELVSITFLKDAVAYPIV 259
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.93
Identities = 29/151 (19%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Frame = +3
Query: 387 IAIIENELSELN---LYLGKNSRNKRELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEK 557
I++ + E+ +L L + +K FD L L+ L + + ++ N LE+
Sbjct: 594 ISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ 653
Query: 558 RELDVMNL--MQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDI 731
++ + ++K+ + I + K ++ ++NE I LN+ ++ K +
Sbjct: 654 LKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEM--- 710
Query: 732 KISEEISTISLQILELVTSLENDINDXLTSI 824
E ++T + + +++L+ ND L S+
Sbjct: 711 ---ESVTTSKESLADYLSNLKERHNDELDSL 738
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 35 ERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQI 181
E + +VS+ ++DNNN V+++ D +F A D T ++QI
Sbjct: 549 ETFNEQIVSHFNLNDNNNNKVLSIPRDSLQFYNAVFSDDIFVTTNSEQI 597
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +3
Query: 438 NSRNKRELFDGLSSVLKRLIGTP-DAQDAEHYNECINSLEKRELDVMNLMQKQLQITSST 614
+S +K EL +S + K+ D Y C EKR+ D + +QK+ +
Sbjct: 1104 SSVDKSELVSNISVLKKKTEDREVDINVLSEYRRCNKEAEKRDSDYQSELQKRTDLKKVV 1163
Query: 615 IKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDI 731
++ + + Y II+ + + + I N ++
Sbjct: 1164 TDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAELEL 1202
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +3
Query: 534 ECINSLEKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTK 713
E + + + N K+L +IK+F + ++ + + + R+ +Y + +K
Sbjct: 28 EFVEKFAESLYETQNDGSKKLSSIDGSIKSFAACLHELNRLKSRVGD---RIRDYASASK 84
Query: 714 NTVFDI-KISEEISTISLQILELVTSLENDINDXLTSILXA 833
+ + S + Q+LEL LE+++ND + ++ A
Sbjct: 85 QVQNEYHQKSNHLREKFAQVLELSRHLEDNVNDMRSGLVDA 125
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 498 GTPDAQDAEHYNECINSLEKRELDVMNLMQKQLQITSSTIKNFNESIF 641
GTPDA E +NE + LE L ++ QL +IK F+ SIF
Sbjct: 171 GTPDA---EGWNEFLKCLEWAVLSSLDSRFLQLSEQIRSIKLFDSSIF 215
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 3.8
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Frame = +3
Query: 396 IENELSELNLYLGKNSRNKRELFDGLSSVLKRLIGTPDAQDAEHYNEC---INSL--EKR 560
+E +++ N L + S + RE F +LK G +A+ A EC NS+ +K
Sbjct: 1018 LEEAVTQKNYLLSQQSHDDRESFRERMQILKSKYGALNAERAGLLGECKQLENSITKDKE 1077
Query: 561 EL-----DVMNLMQKQLQITSSTIKNFNESIFKI--TYDEQIINENINRLNE 695
EL D ++QL I + T NE + K D I+ + ++NE
Sbjct: 1078 ELNMEFKDADERFRRQL-IKTKTTGKANEDLGKYAKALDVAIMQLHSMKMNE 1128
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 5.0
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 408 LSELNLY-LGKNSRNKRELF-DGLSSVLKRLIGTPDAQDAEHYNECINSLEKRELDVMNL 581
L+ +L+ L KN E F D L S+L L GT + + NE I + LD++N
Sbjct: 2876 LNSFSLFELQKNQTYSIEDFEDNLKSILI-LAGTTNCKACLAINESIAGVPGF-LDLLNN 2933
Query: 582 MQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEY 698
+ +T+S + NF + D I +N+N+LNE+
Sbjct: 2934 L-----LTNSEVSNFFDQ-----NDWAEIKKNLNKLNEF 2962
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 330 CLYTSLFTKFTNLFNILYKIAIIENELSELNLYLGKNSRNKRELFDGLSSVLKRLIGTPD 509
CL S+F K ++ N + E E++ LN S+N + L S+LK +
Sbjct: 245 CLIYSIFNKNQSIINANNHLLSYEKEITSLNSPTFIESKNLPS--ENLKSLLKETLAVDP 302
Query: 510 AQDAEHY 530
Q A +
Sbjct: 303 KQRASMF 309
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 74 SDNNNKYVITLQDDLTRFVQAYPIPDKEAI 163
SD N KY+ T Q + T +A+P D+ A+
Sbjct: 131 SDGNTKYLATTQMEPTSARRAFPCWDEPAL 160
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/100 (20%), Positives = 44/100 (44%)
Frame = +3
Query: 450 KRELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEKRELDVMNLMQKQLQITSSTIKNFN 629
K E+ + + + LK + ++ E NS+ + + D QL+ + + +
Sbjct: 794 KEEIANSVRNALKNNLEKIESFLENSIAELQNSV-REDFDKQTSSLAQLRYSIQNVAHAQ 852
Query: 630 ESIFKITYDEQIINENINRLNEYINTTKNTVFDIKISEEI 749
+ ++ Y+E +NE + L Y+ T D+KI ++
Sbjct: 853 KES-EVKYNE--LNEQVKTLEGYVETVLEKFNDLKIENKV 889
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 693 EYINTTKNTVFDIKISEEISTISLQILELVTSLENDINDXLTSILXAKS 839
EY+++ +++ IS IS +I + S ENDI TS A S
Sbjct: 105 EYVSSFAWNSSRFHMNKTISEISDRITSEIISFENDIRTRQTSFQQASS 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,841
Number of Sequences: 5004
Number of extensions: 67296
Number of successful extensions: 218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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