Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L01
(926 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 36 0.060
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 35 0.11
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 34 0.18
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 33 0.32
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 31 0.98
09_04_0353 + 16915618-16916934 31 0.98
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 30 2.3
04_04_0395 - 24911449-24911719,24912048-24912400,24912486-249125... 30 3.0
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 29 5.2
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 29 5.2
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939... 29 6.9
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 29 6.9
11_06_0174 - 20907202-20907258,20907875-20908024,20908293-209084... 28 9.2
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 35.5 bits (78), Expect = 0.060
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 29 PFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILHFXQHFGV 208
PF +D++ + +Y+ D LT++ +AYP+ + + K I FGV
Sbjct: 1618 PFAVWGLDILGPFRRAPGGFEYLYVAIDRLTKWPEAYPVVKIDKHSALKFIKGITARFGV 1677
Query: 209 PKRLHSDQG 235
P R+ +D G
Sbjct: 1678 PNRIITDNG 1686
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 29 PFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILHFXQHFGV 208
PF +D++ + + +Y+ D T++ +AYP+ + + K I FGV
Sbjct: 1527 PFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPEAYPVVKIDKHSALKFIKGITARFGV 1586
Query: 209 PKRLHSDQG 235
P R+ +D G
Sbjct: 1587 PNRIITDNG 1595
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 33.9 bits (74), Expect = 0.18
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 552 EKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYIN--TTKNTVF 725
EK+ D M L+QK+ + K+ S K++ EQ++NE+ +L E+ N TK+
Sbjct: 350 EKKSFDAM-LVQKEADLVQRE-KDVRSSEEKLSKKEQVLNESKKKLEEWQNDLDTKSNAL 407
Query: 726 DIKISEEISTISLQILELVTSLEND 800
K E + Q+ E +EN+
Sbjct: 408 K-KWEESLQNDEKQLSEQKLQIENE 431
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 33.1 bits (72), Expect = 0.32
Identities = 37/170 (21%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Frame = +3
Query: 330 CLYTSLFTKFTNLFNILYKIAIIENELSELNLYLGKNSRN------KRELFDGLSSVLKR 491
CL + T +++++E E+S+ ++ L K S + K + + +S ++
Sbjct: 460 CLISEKDTTLLQYNESTRRLSVLECEISKAHMELKKLSDDMAMEVDKLKCAESQNSAMQS 519
Query: 492 LIGTPDAQ---DAEHYNECINSLEKRELDVMNLMQKQLQITS---STIKNFNES---IFK 644
+ T D + + + +E L + + M K+ Q S K + +S I +
Sbjct: 520 ELETLDQKVRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEINR 579
Query: 645 ITYDEQIINENINRLNEYINTTKNTVFDIKISEEISTISLQILELVTSLE 794
+T D ++ N+ +N N +NTV ++K +E++++ ++I LV LE
Sbjct: 580 LTLDMEMANDRLNDFNLVRLNLENTVCELK--KEVTSLEVKIQILVQELE 627
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 SQSTEPFERISMDLVSYSEI-SDNNNKYVITLQDDLTRFVQAYPIPDKE 157
+++ P E + DL + + + KY +TL DD TRF Y + K+
Sbjct: 200 ARNLAPLELVHSDLCEMNSVLTKGGKKYFMTLTDDCTRFCYVYLLKRKD 248
>09_04_0353 + 16915618-16916934
Length = 438
Score = 31.5 bits (68), Expect = 0.98
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 QNTNYFIQSHSNPYISFTICSIF*N-VYIPPYLQNLQIYSTFYTKSL*SKTNFRN*TFT 429
Q T YF + S Y S S N +Y P QN +Y FY S S N TFT
Sbjct: 122 QPTPYFEPAKSTSYASLPCSSAMCNALYSPLCFQNACVYQAFYGDSASSAGVLANETFT 180
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 SQSTEPFERISMDLVSYSEI-SDNNNKYVITLQDDLTRFVQAYPIPDKE 157
+++ P E + DL + + + KY +TL DD TRF Y + K+
Sbjct: 380 ARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKD 428
>04_04_0395 -
24911449-24911719,24912048-24912400,24912486-24912560,
24912799-24912891,24912988-24913231,24913437-24913564
Length = 387
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = -2
Query: 610 EDVICNC-FCIRFITSNSRFSR---ELMHSL*CSASCASGVPINLLRTELRPSNNSRLLR 443
EDV +C F ++ + R R +LM + CS C++ + +L+ + L + + RLL+
Sbjct: 267 EDVPAHCGFRAIWVVPSRRRKRIGSQLMDAASCSLLCSASISKSLILSYLAKALSIRLLQ 326
Query: 442 EFLPK*R 422
E LP+ R
Sbjct: 327 EKLPRRR 333
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 175 TNLTFXPTLRCSKATSFRPRIGQSTAIQNTNYFI 276
T+L T CSK P +GQ T++Q YFI
Sbjct: 648 TSLRHLYTNGCSKLKCMPPDLGQLTSLQTLTYFI 681
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 147 LTKKQSLLLNKSYIXANTSVFQSDFIQTKDRPIYSHPKYKLFYTIPLKS 293
L + L+L +S A ++DF+ T P+ +PK+ FY++ L++
Sbjct: 272 LIRSSPLILGRSTDAAAIGASETDFVYT---PLLHNPKHPYFYSVALEA 317
>10_08_0260 -
16290798-16290893,16292284-16292570,16293248-16293901,
16294999-16295546,16295900-16295961,16296062-16296481
Length = 688
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +3
Query: 597 QITSSTIKNFNESIFKITYDEQI-----INENINRLNEYI 701
QI ST + ++ K Y E+ +NEN+N LNEYI
Sbjct: 610 QIIESTYPDLQDNCCKQNYLEERAILCPVNENVNELNEYI 649
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/69 (21%), Positives = 31/69 (44%)
Frame = +2
Query: 29 PFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILHFXQHFGV 208
PF +D+V + + ++ D +++++A P+ A ++ FGV
Sbjct: 452 PFAVWGLDMVGPFKRAVGGYTHLFVAIDKFSKWIEAKPVITITADKARDFFINIVHRFGV 511
Query: 209 PKRLHSDQG 235
P R+ +D G
Sbjct: 512 PNRIITDNG 520
>11_06_0174 -
20907202-20907258,20907875-20908024,20908293-20908414,
20908748-20908901,20909040-20909249
Length = 230
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 486 KRLIGTPDAQDAEHYNECINSLEKRELDVMNLMQKQL 596
++ +G PD +H+ S E + L+V NLM+K+L
Sbjct: 135 QKAVGVPDLP-VQHHQLIYRSKELKNLEVANLMRKRL 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,023
Number of Sequences: 37544
Number of extensions: 322584
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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