Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_L01
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 44 1e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 44 1e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 44 1e-04
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 35 0.072
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 35 0.072
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 34 0.17
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 34 0.17
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 34 0.17
AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical ... 30 2.0
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical ... 29 4.7
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 29 6.2
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 29 6.2
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 6.2
AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical ... 29 6.2
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 TEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILH--FXQ 196
T P E ++ DL+ +S N+Y++T+ D T++ A PIPDK+A T+ K +
Sbjct: 1618 TFPLEIVACDLMDVG-LSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIG 1676
Query: 197 HFGVPKRLHSDQG 235
+P +L +DQG
Sbjct: 1677 EGRIPLKLLTDQG 1689
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 TEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILH--FXQ 196
T P E ++ DL+ +S N+Y++T+ D T++ A PIPDK+A T+ K +
Sbjct: 1521 TFPLEIVACDLMDVG-LSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIG 1579
Query: 197 HFGVPKRLHSDQG 235
+P +L +DQG
Sbjct: 1580 EGRIPLKLLTDQG 1592
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 TEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQILH--FXQ 196
T P E ++ DL+ +S N+Y++T+ D T++ A PIPDK+A T+ K +
Sbjct: 1532 TFPLEIVACDLMDVG-LSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIG 1590
Query: 197 HFGVPKRLHSDQG 235
+P +L +DQG
Sbjct: 1591 EGRIPLKLLTDQG 1603
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 35.1 bits (77), Expect = 0.072
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Frame = +3
Query: 405 ELSELNLYLGKNSRNKRELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEKRELD----V 572
E EL L + K+ELF ++S++ +L + D + +NSL KREL+
Sbjct: 17 EKQELRKQLDREQNEKQELFMQINSMIAKLADSGDQDEINRLKSDVNSL-KRELEAEKIA 75
Query: 573 MNLMQKQLQITSSTIKN-FNESIFKITYDEQIINENINRLNEYINTTKNTVFDIKISEEI 749
N +L+ KN +SI ++ + + I L +N ++ + +++
Sbjct: 76 SNAEAARLKSELQKAKNEIQDSIKDGDSEKDAMEQEIENLQRQLNIKTASLQSLMLAKSD 135
Query: 750 STISLQILELVTSLENDIND 809
S+ + ++ E +L+ + D
Sbjct: 136 SSKTDKLSEENETLKLKVED 155
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 35.1 bits (77), Expect = 0.072
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Frame = +3
Query: 405 ELSELNLYLGKNSRNKRELFDGLSSVLKRLIGTPDAQDAEHYNECINSLEKRELD----V 572
E EL L + K+ELF ++S++ +L + D + +NSL KREL+
Sbjct: 17 EKQELRKQLDREQNEKQELFMQINSMIAKLADSGDQDEINRLKSDVNSL-KRELEAEKIA 75
Query: 573 MNLMQKQLQITSSTIKN-FNESIFKITYDEQIINENINRLNEYINTTKNTVFDIKISEEI 749
N +L+ KN +SI ++ + + I L +N ++ + +++
Sbjct: 76 SNAEAARLKSELQKAKNEIQDSIKDGDSEKDAMEQEIENLQRQLNIKTASLQSLMLAKSD 135
Query: 750 STISLQILELVTSLENDIND 809
S+ + ++ E +L+ + D
Sbjct: 136 SSKTDKLSEENETLKLKVED 155
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.9 bits (74), Expect = 0.17
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 513 QDAEHYNECINSLEKRELDVMNLMQ--KQLQITSSTIKN-FNESIFKITYDEQIINENIN 683
+ A+H N+ + + + + N +Q ITS T +N + K++ + + NE I
Sbjct: 1398 KQADHLNQLASQFDTKLTKLRNELQDTNDKLITSDTERNALRNELQKLSQELKFGNEQIQ 1457
Query: 684 RLN-EYINTTKNTVFDIKISEEISTISLQILELVTSLENDINDXLTS 821
R + EY T + ++SE+ +LQ LE ND+ L S
Sbjct: 1458 RKSDEYQTTIDDLAHSHRVSEDSRLNALQELEARKYEINDLTSRLDS 1504
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.9 bits (74), Expect = 0.17
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 513 QDAEHYNECINSLEKRELDVMNLMQ--KQLQITSSTIKN-FNESIFKITYDEQIINENIN 683
+ A+H N+ + + + + N +Q ITS T +N + K++ + + NE I
Sbjct: 1471 KQADHLNQLASQFDTKLTKLRNELQDTNDKLITSDTERNALRNELQKLSQELKFGNEQIQ 1530
Query: 684 RLN-EYINTTKNTVFDIKISEEISTISLQILELVTSLENDINDXLTS 821
R + EY T + ++SE+ +LQ LE ND+ L S
Sbjct: 1531 RKSDEYQTTIDDLAHSHRVSEDSRLNALQELEARKYEINDLTSRLDS 1577
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.9 bits (74), Expect = 0.17
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 513 QDAEHYNECINSLEKRELDVMNLMQ--KQLQITSSTIKN-FNESIFKITYDEQIINENIN 683
+ A+H N+ + + + + N +Q ITS T +N + K++ + + NE I
Sbjct: 1471 KQADHLNQLASQFDTKLTKLRNELQDTNDKLITSDTERNALRNELQKLSQELKFGNEQIQ 1530
Query: 684 RLN-EYINTTKNTVFDIKISEEISTISLQILELVTSLENDINDXLTS 821
R + EY T + ++SE+ +LQ LE ND+ L S
Sbjct: 1531 RKSDEYQTTIDDLAHSHRVSEDSRLNALQELEARKYEINDLTSRLDS 1577
>AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.9 protein.
Length = 244
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/86 (22%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 552 EKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDI 731
E +LD+M +M + I + + + +++ ++Q+I +++ + NEY++ + I
Sbjct: 45 ENLQLDIM-IMAAEKDIATDEVDSVKQALM----NQQMITQHLKKRNEYLDDLEEANERI 99
Query: 732 KI-SEEISTISLQILELVTSLENDIN 806
KI EE+ + +I + SL ++
Sbjct: 100 KILDEELDKLEAKISKTEESLVQSVS 125
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 549 LEKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFD 728
LE+ E D N M L+I ST NF + ++ YD+Q++ N++ + E T N
Sbjct: 1109 LERSEQDP-NSMACLLEI--STADNFENAENQLEYDQQLVVFNLDNIQEACGQTNNIG-- 1163
Query: 729 IKISEEISTISLQILELVTSLENDIND 809
S E S+ S + E + L++ D
Sbjct: 1164 ---STETSSKSTEQSEDIDKLDHHFED 1187
>AC006607-5|AAF60371.2| 640|Caenorhabditis elegans Hypothetical
protein C09E7.4 protein.
Length = 640
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +3
Query: 519 AEHYNECINSLEKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEY 698
A+HY +S+ + D++++ ++ +I T+K E KI I+ ++ +N++
Sbjct: 367 ADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVK---ELYAKINSHLTILKSSLQVINKF 423
Query: 699 INTTKNTVFDIKISEEISTISLQILELVTSLENDI--NDXLTSILXAKS 839
K VF+ EI+ Q+ + + E+ + ND + S + AK+
Sbjct: 424 EAILK--VFEESSLHEIAPTMFQLRTSLKTEEDKVGENDIMPSAVVAKA 470
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 DLTRFVQAYP-IPDKEAITIAKQILHFXQHFGVPKRLHSD 229
DL +++Q+ P IP+++ I A I + +H + K +H D
Sbjct: 203 DLKKYLQSTPSIPNRQLIAFALDIANGMRHLVIKKVIHRD 242
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 DLTRFVQAYP-IPDKEAITIAKQILHFXQHFGVPKRLHSD 229
DL +++Q+ P IP+++ I A I + +H + K +H D
Sbjct: 267 DLKKYLQSTPSIPNRQLIAFALDIANGMRHLVIKKVIHRD 306
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 14 SQSTEPFERISMDL---VSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQIL 184
++ + PF+ + +D ++Y + YV+ +TR + IPD + +
Sbjct: 1794 TEPSTPFQHVGLDYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLELIPDGTTARFIESLG 1853
Query: 185 HFXQHFGVPKRLHSDQG*ANLQPSKI 262
GVP+ ++SD L KI
Sbjct: 1854 IIFNRVGVPETIYSDNAQTFLLGEKI 1879
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
T06E4.1 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +3
Query: 507 DAQDAEHYNECINSLEKREL----DVMNLMQKQLQITSSTIKNFNESIFKITYDEQIIN- 671
+A+ E NE +NS KR++ + +Q +L + S ++N E + +I+N
Sbjct: 854 NAEVLESLNEKLNSSHKRDMVALASQLEELQHKLVVGESQVENVKEELI----GAKIMNK 909
Query: 672 ENINRLNEYINTTKNTVFDIKISEEISTISLQ 767
E ++ LN + + ++K S E+S +Q
Sbjct: 910 EMVDELNAKLGDALEGMEELKKSLEVSEAKVQ 941
>Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = +3
Query: 609 STIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDIKISEEISTISLQILELVTS 788
S + N+ S+F+ T D +++NEN N +N +N + V S+EI I+ +V +
Sbjct: 391 SPVANWGYSVFQPTEDVRMLNEN-NAINRKLNEDFSAV-----SKEIPV----IVSMVET 440
Query: 789 LENDINDXLTSILXAKSNTV 848
+E++I SI+ + V
Sbjct: 441 VESNIIANAKSIVVPNKSAV 460
>Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = +3
Query: 609 STIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDIKISEEISTISLQILELVTS 788
S + N+ S+F+ T D +++NEN N +N +N + V S+EI I+ +V +
Sbjct: 391 SPVANWGYSVFQPTEDVRMLNEN-NAINRKLNEDFSAV-----SKEIPV----IVSMVET 440
Query: 789 LENDINDXLTSILXAKSNTV 848
+E++I SI+ + V
Sbjct: 441 VESNIIANAKSIVVPNKSAV 460
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6a protein.
Length = 1067
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 11 TSQSTEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIP 148
T Q +PFER M Y + + +T +R+ + YP+P
Sbjct: 936 TFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVP 981
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6b protein.
Length = 1067
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 11 TSQSTEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIP 148
T Q +PFER M Y + + +T +R+ + YP+P
Sbjct: 936 TFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVP 981
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 11 TSQSTEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIP 148
T Q +PFER M Y + + +T +R+ + YP+P
Sbjct: 936 TFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVP 981
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 11 TSQSTEPFERISMDLVSYSEISDNNNKYVITLQDDLTRFVQAYPIP 148
T Q +PFER M Y + + +T +R+ + YP+P
Sbjct: 936 TFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVP 981
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 14 SQSTEPFERISMDL---VSYSEISDNNNKYVITLQDDLTRFVQAYPIPDKEAITIAKQIL 184
++ + PF+ + +D ++Y + YV+ +TR + IPD + +
Sbjct: 1794 TEPSTPFQHVGLDYLGPIAYKNKDTHFKAYVLIYTCLVTRAAKLELIPDGTTARFIESLG 1853
Query: 185 HFXQHFGVPKRLHSDQG*ANLQPSKI 262
GVP+ ++SD L KI
Sbjct: 1854 IIFNRVGVPETIYSDNAQTFLLGEKI 1879
>AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.8 protein.
Length = 244
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 552 EKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTVFDI 731
E +LD+M +M + I + + + +++ ++Q+I +++ + NEY++ + I
Sbjct: 45 ENLQLDIM-IMAAEKDIATDEVDSVKQALM----NQQMITQHLKKRNEYLDDLEEANERI 99
Query: 732 KI-SEEISTISLQILELVTSLENDIN 806
KI E++ + +I + SL ++
Sbjct: 100 KILDEKLDKLEAKISKTEESLVQSVS 125
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +3
Query: 552 EKRELDVMNLMQKQLQITSSTIKNFNESIFKITYDEQIINENINRLNEYINTTKNTV 722
E + L V + +KQ+ + I + N+++F++ D+ I + + LN+++ K V
Sbjct: 215 EFQNLTVDSHQKKQILSKAFKIISQNDAVFQLAIDQYISSRSQELLNQFVEINKMAV 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,821
Number of Sequences: 27780
Number of extensions: 357610
Number of successful extensions: 1114
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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