Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_L01
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.9  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   5.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 756 ISLQILELVTSLENDINDXLTSILXAKSNTVHPSII 863
           I L+  E     E+D  D   +I+     TVHP  I
Sbjct: 339 IPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETI 374


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/45 (20%), Positives = 23/45 (51%)
 Frame = +3

Query: 675 NINRLNEYINTTKNTVFDIKISEEISTISLQILELVTSLENDIND 809
           N   + +Y  T KN+++D+ ++     +     E+   + N++N+
Sbjct: 59  NAEGMKKYCETYKNSIYDVSMT--FGPVPKFEGEMAEKISNELNE 101


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 507 DAQDAEHYNECINSLEKRELDVMNLMQKQLQITSSTIKNFNESIFKI 647
           D  D  +  + +N + ++  + M  +  +LQ   +   NFNE  F+I
Sbjct: 523 DRMDRTNRMDRMNRMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRI 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,773
Number of Sequences: 438
Number of extensions: 5124
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)