Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K20
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44...    30   1.2  
09_04_0385 + 17167174-17167440,17173321-17173962                       30   1.2  
02_05_0516 + 29694631-29695182                                         30   1.2  
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331...    29   2.1  
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564...    28   4.8  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   8.3  

>11_01_0058 +
           438000-438230,438847-438902,440003-440117,440314-440424,
           442331-442518,442957-443013,443109-443268,443368-443436,
           443580-443699
          Length = 368

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 96  GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 254
           GD+   Y P     Y P  Y+G+P  P + L+   +G        TPS V  A
Sbjct: 15  GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 281 LPSPPGSTESSGHGRRSLAAATEPRTD 201
           LP  P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 210 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 317
           W  RRSK+ PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>01_03_0045 +
           11929624-11929890,11930500-11930551,11932683-11933103,
           11933574-11934162
          Length = 442

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 209 RTDFVQLQLAEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCTFLKISSS 42
           R+DF  + +   + R   VACR++    +R++ L +   +   RKAR T  K+  S
Sbjct: 304 RSDFRLIAIDLVASRSRQVACRLLSRRTTRVLCLAISLSNATHRKARATPPKVFES 359


>03_04_0044 +
           16754638-16754676,16755472-16755598,16756325-16756451,
           16756866-16757431,16757896-16758211,16758373-16758613,
           16758734-16758823,16759343-16759780,16759877-16760185,
           16760392-16760406
          Length = 755

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +3

Query: 36  VPTRTDF*KSASGFSKNMAFGDYPKEYNPA--VH---GPYDPARYYGKPDTPFSQLKLNE 200
           VPT T   ++AS   ++ + G   K   P+   H    P   ++Y+ KP+TP    K+N 
Sbjct: 230 VPTSTATKENASNGQQSRSSGVSSKNSRPSSSTHLSSRPSSSSQYHSKPNTPVGHPKVNP 289

Query: 201 IGSWFGRRSKTPS 239
              W   +S +PS
Sbjct: 290 QLEW-KPKSVSPS 301


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 126 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 305
           +HG         KPD P   L LN+ GS+    SK     +   + AWW + ++  +   
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690

Query: 306 VG 311
            G
Sbjct: 691 TG 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,219
Number of Sequences: 37544
Number of extensions: 301698
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)