Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K19
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    69   5e-13
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.4  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   7.4  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   9.7  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   9.7  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 38/104 (36%), Positives = 65/104 (62%)
 Frame = +1

Query: 301 LTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREEL 480
           + ++V   GG +LLFNK K   ++L +L      S  L  +L + +  + +     +++L
Sbjct: 1   MAIKVELLGGLDLLFNKQKALSLSLSNL-----GSTKLG-SLIDYMAQIIEK--PSQKDL 52

Query: 481 FLKDDSVRPGILVLINEEDWELHGQLNYELXENDKIMFISTLHG 612
           F+ + +VRPGI+VL+N++DWEL  +  Y L E D+++F+STLHG
Sbjct: 53  FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +1

Query: 286  EMAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLV 465
            E  E +          EL+ N+ +  E+   SLK  L ++QNL    +E L  L   L  
Sbjct: 685  EREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFE 744

Query: 466  ERE-ELFLKDDSVRPGILVLINEEDWELHGQLNYELXENDKIMFISTLH 609
            ER+      DD  +   + ++N E  +   Q+ +   E+DK+     +H
Sbjct: 745  ERKIRSGSNDDIEKNKEINVLNSELADKLAQIRH--LESDKMELDKLVH 791


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 520 TRVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKRSSMT 377
           ++++Q+      + T     A  PL++S +++TS++D  +   RSS T
Sbjct: 799 SQLFQLLSEFSKKDTASSTGADTPLSRSQSVITSSTDVTSSASRSSDT 846


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 361 KEITLPSLKTFLPDSQNLNW---TLKELLIW--LKDNLLVEREELFLKDDSVR 504
           K IT  S  TF P  ++++W   T  E L++   +D  ++ RE+ F  +++ R
Sbjct: 285 KNITSDSSFTFCPTDKDVDWRTHTAFEQLVYHAYQDRHVINREQFFADEEAKR 337


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +1

Query: 466 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELXENDKIMFIS 600
           EREE+FL+DD  +     L++ +D  L        + +EL  +    FIS
Sbjct: 7   EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 517 RVYQVGQNHPSRTTLLFPPA 458
           ++  VG+N+P+ +  LFPP+
Sbjct: 169 KLKDVGENYPNLSEFLFPPS 188


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 352 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWL 447
           ++ +  T+P  +  LP S N    L E L WL
Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 514 VYQVGQNHPSRTTLLFPPAGCPLT 443
           VYQ    HP R  LL  P GC  T
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKT 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,709
Number of Sequences: 5004
Number of extensions: 48454
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)