Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K17
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    44   2e-05
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    36   0.005
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.061
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.7  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   3.0  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   4.0  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.3  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   7.0  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   9.3  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   9.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.3  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.3  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 46/91 (50%)
 Frame = +3

Query: 156 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 335
           V+ PN    L R    Q P    F   + + K+D+++YL+ +Y + VV V+++I  GK  
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 336 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 428
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 213 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 350
           N + FH  ++  K+ IKN ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 213 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 350
           N + FH  ++  K+ IK  + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 8   SLTKYLLTE*HYLSAKYFNIVYYPLLNTSNFNNVHTVVPHLSKRKPTT*SIFAEFLDEIS 187
           +L  +   + HY + KYF IV+  L+N SN      V P  + +K         +L EIS
Sbjct: 692 ALASFPYVKSHYDAHKYFPIVFDVLMNISNMAPHVKVFPFNTNQKRLIIHGCLLWLKEIS 751

Query: 188 TT 193
            T
Sbjct: 752 DT 753


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 387 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 506
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 396 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 530
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 423 PDLFEKSINEEEEHAKSLDESKKNF---RKY 506
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 459 EHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI*SFI 566
           E+ +++D   ++F+K +  NKS+P   S+  +  F+
Sbjct: 569 ENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFV 604


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +3

Query: 234 SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 392
           S+E    ++K    +  ++    + T +N  + KK+  K +++K       EDD+     
Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356

Query: 393 TLPKTMTFKYPDLFEKSINEEEEH 464
              K  T    ++ +  ++EE EH
Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 44  LSAKYFNIVYYPLLNTSNFNNVHTVVPHLS 133
           LS  +FN+ + PL   ++F+   T  PH S
Sbjct: 289 LSTHHFNLGFQPLSQQTSFSGSSTQNPHSS 318


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 189 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 296
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 393 TLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 545
           T  K  TF      + S+ EE++  +  DE  +  ++  +  K +P+I ++
Sbjct: 245 TTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNY 295


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 8    SLTKYLLTE*HYLSAKYFNIVYYPLLNTSNFNNV 109
            +L++Y   E  + S K F  VY+ LLN  N   V
Sbjct: 1179 ALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITV 1212


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 8    SLTKYLLTE*HYLSAKYFNIVYYPLLNTSNFNNV 109
            +L++Y   E  + S K F  VY+ LLN  N   V
Sbjct: 1179 ALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITV 1212


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 165 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 290
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,956
Number of Sequences: 5004
Number of extensions: 43267
Number of successful extensions: 146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)