Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K11
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             48   5e-06
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   9.2  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 CGVISPRFDVPINDIERW-TNLLPSRQF 337
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +1

Query: 43  MVRXNVLSDALKSIHNAEKRGKRQVLIRP 129
           MVR NVL+DAL SI NAEKRGKRQV IRP
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRP 29



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 140 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 277
           VIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 33  VIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 266 ISPRFDVPINDIERWTNLLPSRQFGYL 346
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 100 RGKRQVLIRPXFQSHR*VFNSDDEARLH 183
           RG R ++  P  Q HR V++ DD A ++
Sbjct: 527 RGDRAMIYLPLNQEHRPVYHRDDRAMIY 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,100
Number of Sequences: 59808
Number of extensions: 222385
Number of successful extensions: 1092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)