Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K09
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   3.7  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   4.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   6.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.5  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 280 VYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLK 405
           V+  PK   +KGI++R  S     V VT+  VG T   L LK
Sbjct: 49  VFTSPKTDAVKGIVSRSSSNV-VRVNVTA-KVGRTTHVLKLK 88


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/87 (29%), Positives = 38/87 (43%)
 Frame = +1

Query: 178 AKDFVDGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVT 357
           AK   D  K     ++ E+   K  PL + D    Y++    +I+     DL + KAEV 
Sbjct: 4   AKKIDDDEKQLVKPVNKEQTYKKPIPLEEDD----YIEGLSYIIQQQYFPDLPKLKAEVV 59

Query: 358 VTSGGVGATNVTLHLKSERGEGLNYLI 438
           + S  VG+ +        R E L YLI
Sbjct: 60  LESEEVGSFDAQ---NESRDEKLKYLI 83


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 263 FINGYPLTTTFSVEINKLFT 204
           F+NGY LT TF  ++NK F+
Sbjct: 247 FLNGYALTPTFR-DVNKKFS 265


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 330 FIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHIW 449
           F PNE+    D W           +K  RG   LP   +W
Sbjct: 351 FCPNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVW 390


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 456 FLNNFNFIHL---YNYRPAMYR*NVIVLMLIFISF 551
           FLNNFNF H+   + +R   Y  ++ +   + I F
Sbjct: 213 FLNNFNFEHIKADFAFRQKNYEESIYLYARLLIKF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,395
Number of Sequences: 5004
Number of extensions: 39583
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)