Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_K09
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 36 0.017
Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical p... 36 0.017
AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical ... 32 0.27
U80439-6|AAB37642.1| 564|Caenorhabditis elegans Ezrin/radixin/m... 32 0.36
U80439-5|AAB37643.1| 563|Caenorhabditis elegans Ezrin/radixin/m... 32 0.36
AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein. 32 0.36
AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.36
AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein. 32 0.36
AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv prot... 32 0.36
AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.36
AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein. 32 0.36
AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.36
AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81146-4|CAB03525.1| 501|Caenorhabditis elegans Hypothetical pr... 27 7.8
U40940-4|AAA81705.2| 333|Caenorhabditis elegans Hypothetical pr... 27 7.8
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 375 RGYQCDSSLKKRKRGGTELPNTHIW 449
R + CDS LKK +RGG EL + H+W
Sbjct: 250 RRFLCDSPLKKEQRGGIELGSFHLW 274
>Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical
protein K07A1.9a protein.
Length = 485
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 375 RGYQCDSSLKKRKRGGTELPNTHIW 449
R + CDS LKK +RGG EL + H+W
Sbjct: 278 RRFLCDSPLKKEQRGGIELGSFHLW 302
>AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical
protein VT23B5.1 protein.
Length = 963
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 393 SSLKKRKRGGTELPNTHIW*KFLNNFNFIHLYNYRP 500
S L+K K TE P T + K + N NF H+Y +RP
Sbjct: 848 SKLEKFKLDLTEGPTTRMRRKLIPNRNFYHIYPFRP 883
>U80439-6|AAB37642.1| 564|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform b protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>U80439-5|AAB37643.1| 563|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform a protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv
protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 199 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 324
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical
protein H17B01.4a protein.
Length = 946
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 229 EKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVTVTSGGV 375
+KV +G L+ R+ Y YV+P L I I D T V + +G +
Sbjct: 671 QKVHSQGRVLVTREVQYKYVNPNLAAIASINRADQHMTITLVDIVTGQI 719
>Z81146-4|CAB03525.1| 501|Caenorhabditis elegans Hypothetical
protein K10D11.6 protein.
Length = 501
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -1
Query: 260 INGYPLTTTFSVEINKLFTFVPSTKSLASIFNTKTTDRSTKTIL*FIFEKLGYVVDVISR 81
I G+ L +TF E+N V + L F +T + I +LG V++ + R
Sbjct: 393 IGGFYLNSTFQFEVNVTHLDVSNVAVLTLTFGNETGSPTIHQISNSTNFQLGQVIEAVGR 452
Query: 80 ANCVS 66
VS
Sbjct: 453 NMTVS 457
>U40940-4|AAA81705.2| 333|Caenorhabditis elegans Hypothetical
protein T03G6.1 protein.
Length = 333
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 93 CHFSSELRKRXRKIFYLHQNDLVANKFILII 1
CHF R R K +LH D++ N + ++
Sbjct: 110 CHFEQTFRTREEKPVHLHMLDILINNSVGLV 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,709
Number of Sequences: 27780
Number of extensions: 218965
Number of successful extensions: 394
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -