Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K09
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 352 VTVTSGGVGATNVTLHLKSERGEGL 426
           V++    +  TN  +++  E+GEGL
Sbjct: 192 VSLAVQAIDRTNTMVYIADEKGEGL 216


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 377 PTPPLVTVTSAFV 339
           P PP+ TVTSA V
Sbjct: 181 PEPPVPTVTSACV 193


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +3

Query: 345 SRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHIW*KFLNNFNFIHLYNYRPAMY 509
           SR   ++ R R  +  SSL  +        N + +    NN+N  +  NY+   Y
Sbjct: 300 SRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,630
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)