Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K07
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   3.2  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  29   5.6  
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)            28   7.4  

>SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
 Frame = +2

Query: 299 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVT 478
           + S+ E+P+   +K   ++   +KP    +  G  S + +P E R R  TY     + +T
Sbjct: 78  MTSDTEIPARFVLK--FEQIYLSKPT-HWEKDGAPSPM-MPNEARLRNLTYSAPFYVDIT 133

Query: 479 LCI----DGRSVTIERSL--GYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKG 640
                  +   VT    +  G +PIM++S  C L  L   +L E NE   + GGYF+I G
Sbjct: 134 KTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIING 193

Query: 641 HERL 652
            E++
Sbjct: 194 SEKV 197


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 663 CWLHEGTTLWPSSGQDG 713
           CW HEG   WP  G +G
Sbjct: 308 CWYHEGFERWPEYGHEG 324


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 128 MNPKKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPS 307
           +NP  L   P  + TS    R+ P +ANP   S G+ H D  +  +    K   +  L +
Sbjct: 244 VNPSSLVSGPVNSETSEGKARETPDLANP--NSSGSYHEDKKHVTMTTAAKSRSSTTLGT 301

Query: 308 EFELPSG 328
           E  L  G
Sbjct: 302 EDVLSVG 308


>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
          Length = 261

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 353 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKI 469
           + +F KP +P+   G +S   +PT  ++R  T+    +I
Sbjct: 121 QRSFGKPKIPLLMAGKESYAPVPTPAKRRRLTHIAHARI 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,636,280
Number of Sequences: 59808
Number of extensions: 460873
Number of successful extensions: 1124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)