Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_K06
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 103 3e-23
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 41 2e-04
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 28 1.4
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.8
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 27 2.4
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 27 2.4
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 27 2.4
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 27 2.4
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 4.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 26 5.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 7.5
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 7.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.9
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 9.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 9.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.9
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 9.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.9
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 9.9
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 9.9
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 103 bits (247), Expect = 3e-23
Identities = 51/128 (39%), Positives = 83/128 (64%)
Frame = +1
Query: 400 EKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPN 579
EKVYVPVK++P+ NF+G ++GPRG T K +E ++G KI +RGKGS+++ K + N
Sbjct: 188 EKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGN 247
Query: 580 WEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGT 759
E +DLH L+T D+E++ + + +D V + +G+++L + QL +LA +NGT
Sbjct: 248 ME---EDLHCLVTA-DSEDKINHAI-KLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGT 302
Query: 760 YRDSSSKV 783
RD ++V
Sbjct: 303 LRDDENQV 310
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 394 LTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGS 534
L EKVY+ + F+ I+GP+G K ++QET ++ ++G+GS
Sbjct: 289 LEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGS 335
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 514 MVRGKGSMRDKKKEDANRGKPNWEHLADDLH 606
M+RG+GS + ++ DAN W HL LH
Sbjct: 520 MMRGRGSAKSVERRDAN----TWVHLIGHLH 546
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 687 KETLHFINGPR*LYLGSVFSIFNCQQNVEVI 595
K+TL F +G + L L + FS+FN +Q EV+
Sbjct: 218 KQTLDFYSGSQILRLLNDFSMFNPEQREEVL 248
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 274 MHMERLLDEEIAKVRASLFQINGVKKEPLILPEPEGMVTTLTEK 405
+H++ LD E A +++F I K + LP+ +G+ ++TE+
Sbjct: 208 IHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEE 251
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 274 MHMERLLDEEIAKVRASLFQINGVKKEPLILPEPEGMVTTLTEK 405
+H++ LD E A +++F I K + LP+ +G+ ++TE+
Sbjct: 208 IHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEE 251
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 756 SIYDRQLHQLALXQLIFTVSLWH-KETLHFINGPR--*LYLGSVFSI 625
+I D+Q H L L Q S WH K++ F N P Y S+ SI
Sbjct: 187 AIIDKQPHSLKLFQYFINRSKWHMKQSNIFSNVPHESSFYRNSIISI 233
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 274 MHMERLLDEEIAKVRASLFQINGVKKEPLILPEPEGMVTTLTEK 405
+H++ LD E A +++F I K + LP+ +G+ ++TE+
Sbjct: 208 IHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEE 251
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 685 LVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNADEEWRR 819
+VPQ GE ++ ++ ME+ + TY+ S V+ + D ++ +
Sbjct: 348 IVPQVGGEADVDPKEYMEMLL--STYKASKELVNTAFHGDTDFTK 390
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 256 AFPNVFMHMERLLDEEIAKVRASLFQINGV 345
A PNV + + R+L +I ++ + L NG+
Sbjct: 268 ALPNVLLSLYRILPIDIRRIMSKLIVFNGI 297
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 445 VGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANR 567
VG I+G G K + T +I + + + ++ +DA +
Sbjct: 236 VGAIIGTNGQNLKSIMDRTSTRIQIPKRNNTANESSDDAKK 276
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 536 IDPFPLTIILHPVSCSSCFAVIPLGPRILPTKLKSGCSLT 417
+D P+TI+ +S A++ + + T L+ G SLT
Sbjct: 488 LDHLPVTILSSDLSYPQYLALLSVADAFIVTSLREGMSLT 527
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/58 (18%), Positives = 30/58 (51%)
Frame = +1
Query: 556 DANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQ 729
+ +G+ W + + LL E A++KL+ A + ++ ++ Q+D + ++ ++
Sbjct: 320 EQKKGEMVWAQVVEVEKELLLAEKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKE 377
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 240 QEATGCVPECFHAHGATSG*RNSKGPSESI-SNQWS 344
Q+ PE HA+G+ G +SK PS + +N++S
Sbjct: 307 QKPVQTTPEAVHANGSMHGSLHSKSPSPAFTANRFS 342
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 439 NFVGRILGPRGMTAKQLEQE 498
+++ R LGPR +T K +EQE
Sbjct: 288 DYIQRTLGPRYLTGKVVEQE 307
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 613 AERGGHLLSVPNWVCPCLH 557
AE GG LL + W+ CLH
Sbjct: 102 AEMGGVLLFLSYWIWTCLH 120
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 598 DLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGED 711
+L V T+ + RAK A V+ + RL P+ DGE+
Sbjct: 31 ELSVRFTMAALDPRAKSNDAVTVNVITRLEHPEEDGEE 68
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 613 AERGGHLLSVPNWVCPCLH 557
AE GG LL + W+ CLH
Sbjct: 102 AEMGGVLLFLSYWIWTCLH 120
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 613 AERGGHLLSVPNWVCPCLH 557
AE GG LL + W+ CLH
Sbjct: 74 AEMGGVLLFLSYWIWTCLH 92
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 516 HNFAPCFLFQLFCGHTSGS*NPSHEIEIGMFF 421
+NF+ + F G S P+ E IGMFF
Sbjct: 175 YNFSGLMALRFFLGLVESSLLPTMEATIGMFF 206
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 613 AERGGHLLSVPNWVCPCLH 557
AE GG LL + W+ CLH
Sbjct: 102 AEMGGVLLFLSYWIWTCLH 120
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.9
Identities = 26/77 (33%), Positives = 32/77 (41%)
Frame = -1
Query: 479 AVIPLGPRILPTKLKSGCSLTGTYTFSVSVVTMPSGSGNMSGSFFTPLI*NRLARTFAIS 300
AV P P LP+ S SLT + S T PS + S S L FA S
Sbjct: 561 AVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRSQS---------LVNRFASS 611
Query: 299 SSRSRSMCMKTFGNAAS 249
+ ++ S K NAAS
Sbjct: 612 TLKAPSSSSKGVSNAAS 628
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 513 NFAPCFLFQLFCGHTSGS 460
N APC F + CGH S +
Sbjct: 192 NSAPCSSFMIKCGHVSNT 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,697
Number of Sequences: 5004
Number of extensions: 72281
Number of successful extensions: 231
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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