Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K06
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)                   32   0.49 
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_10307| Best HMM Match : DUF1379 (HMM E-Value=3.5)                   29   3.5  
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.5  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        29   4.6  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   4.6  
SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 28   8.0  
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)                  28   8.0  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      28   8.0  

>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score =  130 bits (314), Expect = 1e-30
 Identities = 61/135 (45%), Positives = 96/135 (71%), Gaps = 2/135 (1%)
 Frame = +1

Query: 394 LTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRG- 570
           L+EKV++PVK+HP FNFVG++LGPRG T K+L+  TG K+ + GKGSMRDK+KE+  R  
Sbjct: 101 LSEKVFIPVKDHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRAT 160

Query: 571 -KPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAI 747
             P + HL ++LHVL+ VE    +A  +L  A++E+K+ L+P+ +  DE+ + Q+ E+AI
Sbjct: 161 EDPKYAHLGEELHVLIEVEAPPGQAHARLGIAIEEIKKYLIPEMN--DEIHQEQMREMAI 218

Query: 748 INGTYRDSSSKVSVP 792
           +N +  D+++  + P
Sbjct: 219 LN-SIEDTNNNPAPP 232


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 52/163 (31%), Positives = 89/163 (54%)
 Frame = +1

Query: 280 MERLLDEEIAKVRASLFQINGVKKEPLILPEPEGMVTTLTEKVYVPVKEHPDFNFVGRIL 459
           + + L++E  K    + +IN   K P     P   +  + +KV +P  E+P+ NF+G ++
Sbjct: 66  VRKRLEDERHKFIQDMMKINPDFKPPADYKPP---LIKIQDKVMIPQDENPEVNFIGLLI 122

Query: 460 GPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLADDLHVLLTVEDTENR 639
           GPRG T K +E+ET  KIM+RGKGS++D K+      +       + LH L+T    E+ 
Sbjct: 123 GPRGNTLKNMEKETNAKIMIRGKGSIKDGKQGRGRDMQLMNSGEDEPLHALVTGPTAESV 182

Query: 640 AKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRD 768
              K    + ++ +  +   +G+++L + QL ELA +NGT R+
Sbjct: 183 K--KAVNMIQDILKQGIEAPEGQNDLKRMQLRELAALNGTLRE 223


>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
          Length = 438

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 520 RGKGSMRDKKKEDAN-RGKPNWEHLADDLHVLLTVEDTENRAKI 648
           +GKG ++ KKK+ A  R K N +   +DL V       +NRAKI
Sbjct: 229 KGKGQLKGKKKKKAQKRNKQNHKEEEEDLDVAFVNPMFKNRAKI 272


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = -3

Query: 768 ITVSSIYDRQLHQLAL-XQLIFTVSLWHKET-LHF--INGPR*LYLGSVFSIFNCQQNVE 601
           +T++SIY+RQ+ +L L  +    V   H  T LHF  ING    ++G    +  C+ NV+
Sbjct: 376 VTLTSIYERQVVELLLNHKAKINVKDCHGNTPLHFCCING----HVGPAIVLLQCKANVD 431

Query: 600 VI 595
           V+
Sbjct: 432 VV 433


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +1

Query: 283  ERLLDEEIAKVRASLFQINGVKKEPL----ILPEPEGMVTTLTEKVYVPVKEHPDFNFVG 450
            +R LD  I +++ ++  ++ + K  +    +  +P  MV T+   V   +++ PD+N   
Sbjct: 2510 QRDLDNAIPQLQLAISALDALDKSDISEIRVYTKPPAMVMTVLAAVCTLLQQKPDWNTAK 2569

Query: 451  RILGPRGMTAKQL 489
             +LG RG     L
Sbjct: 2570 LLLGDRGSLKSSL 2582


>SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 532 SMRDKKKEDANR-GKPNWEHLADDLHVLLTVEDTENRAKIKLAR-AVDEVKR 681
           S+R + KE      K  WE + DDL  L+T ED ++  K +  R AV  ++R
Sbjct: 107 SVRHETKEQRQSLNKRRWEKMMDDLDKLITPEDIQDFDKSETVRNAVKTLER 158


>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 649 KLARAVDEVKRLLVPQADGEDELXKRQLME 738
           KL RA+DE +R ++P    E+E+ +  LME
Sbjct: 7   KLKRAIDEFERDIIPHMKHEEEVFQPLLME 36


>SB_10307| Best HMM Match : DUF1379 (HMM E-Value=3.5)
          Length = 179

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 580 WEHLADDLHVLLTVEDTENRAKIKLAR 660
           WE L +DL  LLT ED +   K KL R
Sbjct: 11  WEKLMEDLDKLLTPEDVQKFDKSKLTR 37


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 588 VFPIGFAPVCIFLFLVPHRPFSSDHNFAPCFLFQLFCGHTSGS*NP 451
           +F   + P+ +F F+    PF  D +    +   LF GH + + NP
Sbjct: 242 LFTFSWLPLHVFSFISFFAPFCPDTSNTALYFVSLFLGHGNSAANP 287


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +1

Query: 475  TAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKL 654
            T+KQ+   TG +    GKG +R + K+  ++ + N      D+H  L     E   +I  
Sbjct: 1189 TSKQVSSSTGDRDESEGKGVLRKEIKQCQDQMEANAVATVVDVHCQLADRSHEQLLEITA 1248

Query: 655  ARA-VDEVKRLLVPQADGEDELXKRQLMEL 741
             RA + E++  ++ Q     E  K+    L
Sbjct: 1249 LRAKIMEMRDSIMNQEKELREKIKKDFANL 1278


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 364  LPEPEGMVTTLTEKVYVPVKEH-PDFNFVGRIL-GPRGMTAKQLEQETGCKIMVRGK 528
            LP   G  TT+  ++   ++   P  N V  ++ G    TAK L+Q+TG KI +R K
Sbjct: 1000 LPLSNGK-TTINPRIATEIRRALPLSNGVSCLIRGAERKTAKMLQQKTGAKITIRPK 1055


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 520 RGKGSMRDKK--KEDANRGKPNWEHLADDLHVLLTVEDTENRA 642
           +GKGS ++ +  K+ +++GK NWE +    H L  +E   N+A
Sbjct: 61  KGKGSPKEVENGKKSSDKGKENWE-MDSGTHDLENIEQLVNQA 102


>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 522

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 441 IEIGMFFDWHIHFFCECSHHAFW 373
           +E+G  + WH   F +C H + W
Sbjct: 246 LELGEVYPWHFSQFGKCKHASIW 268


>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
          Length = 402

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = +1

Query: 535 MRDKKKEDANRGKP-----NWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQA 699
           +R+++KE   R K       WE   D+ H+   +  ++ R K   A+A+D + + + P  
Sbjct: 8   LREEEKERLQREKEAEYFSEWEKQEDNFHLNQAMLRSQIRIKDGRAKAIDLLAQYISPDD 67

Query: 700 DGED-ELXKRQLMELAIINGTYRDSSSKVSVPVNADE 807
           D  D ++ +   M + +      D    + V +  D+
Sbjct: 68  DNLDIKMHEPYTMLVGLTQSDLEDLLEDIKVYLEMDQ 104


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 583 EHLADDLHVLLTVEDTENRAKIKLARAV 666
           + L DDLH LLT+ +  NR K +L  A+
Sbjct: 696 DSLRDDLHELLTISNRFNREKRRLESAL 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,695,604
Number of Sequences: 59808
Number of extensions: 532940
Number of successful extensions: 1389
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)