Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K06
         (824 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase...    28   0.30 
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    27   0.53 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.6  

>U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 89

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 384 HAFWFW*YEWFLLHSIDLK*TRSDLCYFFIQKSLHVHENIRERSQLLPV 238
           HA W    +W L+H  DLK  +S +  +F+   + V     +   L P+
Sbjct: 40  HAEWEMSLKWQLMHDNDLKRVKSGVKKWFVDHKIDVMNWTAQSPDLNPI 88


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 648 YLGSVFSIFNCQQNVEVIC*VFPIGFA-PVCIFLFLV 541
           YL  +FS F C+  ++     FPI  A PV + L LV
Sbjct: 43  YLCYIFSKFACKIQIQSFSMAFPINLAVPVTVTLLLV 79


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 532 SMRDKKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLL 687
           S+  +K E   +   N   L D+  VLL  ++      I+L RAVDE K  L
Sbjct: 436 SLTRQKTEVEAKLTANLATLKDETKVLLEEKEKLQTELIELKRAVDESKSAL 487


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,542
Number of Sequences: 2352
Number of extensions: 16961
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87734433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)