Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_K06
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 295 2e-80
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 295 2e-80
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 295 2e-80
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 262 2e-70
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 262 2e-70
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 129 2e-30
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 122 4e-28
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 103 2e-22
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 102 3e-22
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 88 8e-18
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 88 8e-18
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 76 4e-14
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 75 5e-14
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 75 5e-14
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 51 9e-07
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 36 0.027
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 36 0.027
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 30 2.3
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 29 3.1
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 29 3.1
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 29 3.1
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 29 3.1
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 4.0
U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 28 7.1
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 28 7.1
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 28 7.1
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 295 bits (725), Expect = 2e-80
Identities = 140/199 (70%), Positives = 165/199 (82%)
Frame = +1
Query: 184 NTNPSTQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLI 363
+T+ Q A+YL+QLLKD+KQLAAFPNVF H+ERL DEEI KVR LFQ KE
Sbjct: 19 STSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCE-FSKESAP 77
Query: 364 LPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRD 543
LP+ EG T TEKV+VP KEHPD+NFVGRILGPRGMTAKQLEQETGCKIMVRG+GSMRD
Sbjct: 78 LPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRD 137
Query: 544 KKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXK 723
KKKE+ NRGKPNWEHL+++LHVL+ EDTENRAK+KL RAV+EV++LLVP +GED+L +
Sbjct: 138 KKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAPEGEDDLKR 197
Query: 724 RQLMELAIINGTYRDSSSK 780
+QLMELAIINGTYR + +
Sbjct: 198 KQLMELAIINGTYRSGTDQ 216
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 295 bits (725), Expect = 2e-80
Identities = 140/199 (70%), Positives = 165/199 (82%)
Frame = +1
Query: 184 NTNPSTQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLI 363
+T+ Q A+YL+QLLKD+KQLAAFPNVF H+ERL DEEI KVR LFQ KE
Sbjct: 61 STSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCE-FSKESAP 119
Query: 364 LPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRD 543
LP+ EG T TEKV+VP KEHPD+NFVGRILGPRGMTAKQLEQETGCKIMVRG+GSMRD
Sbjct: 120 LPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRD 179
Query: 544 KKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXK 723
KKKE+ NRGKPNWEHL+++LHVL+ EDTENRAK+KL RAV+EV++LLVP +GED+L +
Sbjct: 180 KKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAPEGEDDLKR 239
Query: 724 RQLMELAIINGTYRDSSSK 780
+QLMELAIINGTYR + +
Sbjct: 240 KQLMELAIINGTYRSGTDQ 258
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 295 bits (725), Expect = 2e-80
Identities = 140/199 (70%), Positives = 165/199 (82%)
Frame = +1
Query: 184 NTNPSTQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLI 363
+T+ Q A+YL+QLLKD+KQLAAFPNVF H+ERL DEEI KVR LFQ KE
Sbjct: 19 STSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCE-FSKESAP 77
Query: 364 LPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRD 543
LP+ EG T TEKV+VP KEHPD+NFVGRILGPRGMTAKQLEQETGCKIMVRG+GSMRD
Sbjct: 78 LPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRD 137
Query: 544 KKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXK 723
KKKE+ NRGKPNWEHL+++LHVL+ EDTENRAK+KL RAV+EV++LLVP +GED+L +
Sbjct: 138 KKKEELNRGKPNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVPAPEGEDDLKR 197
Query: 724 RQLMELAIINGTYRDSSSK 780
+QLMELAIINGTYR + +
Sbjct: 198 KQLMELAIINGTYRSGTDQ 216
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 262 bits (642), Expect = 2e-70
Identities = 124/198 (62%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Frame = +1
Query: 187 TNP-STQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLI 363
T P ++ +YLA L+K++K L FP++F ++ERLLD+EI +VR +LFQ + E
Sbjct: 138 TEPIEVEATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVE--- 194
Query: 364 LPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRD 543
LPEP G + ++TEK+YVP E+PD+NFVGRILGPRGMTAKQLEQ+TGCKIMVRGKGSMRD
Sbjct: 195 LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRD 254
Query: 544 KKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXK 723
K KE A+RGK NWEHL DDLHVL+ EDTENR IKL A+++VK+LL+P +G DEL +
Sbjct: 255 KSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKR 314
Query: 724 RQLMELAIINGTYRDSSS 777
+QLMELAIINGTYR S
Sbjct: 315 KQLMELAIINGTYRPMKS 332
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 262 bits (642), Expect = 2e-70
Identities = 124/198 (62%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Frame = +1
Query: 187 TNP-STQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLI 363
T P ++ +YLA L+K++K L FP++F ++ERLLD+EI +VR +LFQ + E
Sbjct: 138 TEPIEVEATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVE--- 194
Query: 364 LPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRD 543
LPEP G + ++TEK+YVP E+PD+NFVGRILGPRGMTAKQLEQ+TGCKIMVRGKGSMRD
Sbjct: 195 LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRD 254
Query: 544 KKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXK 723
K KE A+RGK NWEHL DDLHVL+ EDTENR IKL A+++VK+LL+P +G DEL +
Sbjct: 255 KSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKR 314
Query: 724 RQLMELAIINGTYRDSSS 777
+QLMELAIINGTYR S
Sbjct: 315 KQLMELAIINGTYRPMKS 332
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 129 bits (312), Expect = 2e-30
Identities = 65/143 (45%), Positives = 97/143 (67%), Gaps = 12/143 (8%)
Frame = +1
Query: 385 VTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKED-A 561
V TL+E + VPV+++P +NFVGRILGPRGMT KQLE+ETGC+I VRG+ S E
Sbjct: 68 VVTLSEILMVPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKP 127
Query: 562 NRGKPNWEH-----------LADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGE 708
N+ P++ + LHV + +DT++ A+ K+A AV+ ++RLL P DG+
Sbjct: 128 NKSTPSFSKPSLSIISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLSPPKDGK 187
Query: 709 DELXKRQLMELAIINGTYRDSSS 777
DEL ++QL+++++INGTYR +S+
Sbjct: 188 DELKRQQLVDISLINGTYRVTST 210
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 122 bits (293), Expect = 4e-28
Identities = 59/132 (44%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Frame = +1
Query: 391 TLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKE-DANR 567
TLTE + +PV+ +P +NF+GRI+GPRG TAKQLE++TGC+IM+RG S +
Sbjct: 120 TLTESIRIPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHSNKMYGNALHKTH 179
Query: 568 GKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAI 747
G + + + L V++ A ++ A++ V+ LLVP DG DEL +RQL+ELAI
Sbjct: 180 GDGSQDAIDLPLRVIVETSGPRREATARITAALETVQVLLVPPPDGRDELKRRQLVELAI 239
Query: 748 INGTYRDSSSKV 783
+NGTYR S S++
Sbjct: 240 MNGTYRPSCSRI 251
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 103 bits (247), Expect = 2e-22
Identities = 52/124 (41%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Frame = +1
Query: 400 EKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPN 579
+KV+ P + + N VGR++GPRGMT +QLE++ GCK+ +RGKG +D KE+ R +
Sbjct: 116 DKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVG 175
Query: 580 WEHLADDLHVLLTV-EDTENRAKIKLARAVDEVKRLLVPQADGED-ELXKRQLMELAIIN 753
WEHL + +HV+++V D+E A KL+ +K++L + D EL + QLM+LA+I
Sbjct: 176 WEHLKEPIHVMISVRSDSEEAASEKLS----SIKKMLQEFLEHTDSELKRSQLMQLAVIE 231
Query: 754 GTYR 765
GT +
Sbjct: 232 GTLK 235
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 102 bits (245), Expect = 3e-22
Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 1/191 (0%)
Frame = +1
Query: 217 YLAQLLKDRKQLAAFPNV-FMHMERLLDEEIAKVRASLFQINGVKKEPLILPEPEGMVTT 393
Y+ L ++ QLA + + F H+ L+D+EI KV + G + G +
Sbjct: 60 YIDALKGEKHQLAQYSSGGFNHVFNLIDKEIQKVGGNDAHDGG--------SQMSGDGSM 111
Query: 394 LTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGK 573
LTE + VPV++ PD+NFVGR+LGPRG TAKQLE TGC+I + G + K D +
Sbjct: 112 LTETIMVPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILG------RTKRDGSSSN 165
Query: 574 PNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIIN 753
P + L V ++V +A L V ++ +L DG DEL ++QL+ LA +N
Sbjct: 166 P--DVTTGPLRVQISVPADMPQAAKLLKGGVGHIQAILDVPTDGNDELKRQQLLILANMN 223
Query: 754 GTYRDSSSKVS 786
GTY+ S S
Sbjct: 224 GTYQPRGSATS 234
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 87.8 bits (208), Expect = 8e-18
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Frame = +1
Query: 310 KVRASLFQINGVKKEPLILPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQL 489
K++A L +IN K P P L +KV++P ++ PD NFVG ++GPRG T K L
Sbjct: 279 KIQA-LLKINPNFKPPADYRAPN---IRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSL 334
Query: 490 EQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVD 669
E ETG KI++RGKGS+++ K + P + LH +T D + +A +
Sbjct: 335 EAETGAKIIIRGKGSIKEGKLTNRLGPMPGEN---EPLHAYVTGTDMN-----VIKKACE 386
Query: 670 EVKRLLVPQA--DGEDELXKRQLMELAIINGTYR 765
++K+++ +EL K QL ELA++NGT+R
Sbjct: 387 KIKQVIAEATALPDNNELRKLQLRELALLNGTFR 420
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 87.8 bits (208), Expect = 8e-18
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Frame = +1
Query: 310 KVRASLFQINGVKKEPLILPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQL 489
K++A L +IN K P P L +KV++P ++ PD NFVG ++GPRG T K L
Sbjct: 279 KIQA-LLKINPNFKPPADYRAPN---IRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSL 334
Query: 490 EQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVD 669
E ETG KI++RGKGS+++ K + P + LH +T D + +A +
Sbjct: 335 EAETGAKIIIRGKGSIKEGKLTNRLGPMPGEN---EPLHAYVTGTDMN-----VIKKACE 386
Query: 670 EVKRLLVPQA--DGEDELXKRQLMELAIINGTYR 765
++K+++ +EL K QL ELA++NGT+R
Sbjct: 387 KIKQVIAEATALPDNNELRKLQLRELALLNGTFR 420
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 75.8 bits (178), Expect = 4e-14
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Frame = +1
Query: 439 NFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLADDLHVLLT 618
N++GRILGP GM+A+ +E + +++RG GS+R+K ++ R K N EHL + LHVLL
Sbjct: 153 NYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVR-KRN-EHLEEPLHVLLI 210
Query: 619 V-EDTENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSKVS 786
+ + + + L +A ++++ LL P DE QL+ A +NGTY++ + S
Sbjct: 211 ARHNDKTKCEEILNKAAEKIESLLTPI---HDEYKMDQLVSYAKMNGTYQERPKRKS 264
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 75.4 bits (177), Expect = 5e-14
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Frame = +1
Query: 166 GFKMCDNTNPSTQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGV 345
G+ + T+P I L ++ + L + F + RLL+ E ++ ++
Sbjct: 61 GYPPQEMTSPLDAEIQAVLREIHLEVTGLETSGDQFRNARRLLNSEKERLENNI------ 114
Query: 346 KKEPLILPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRG 525
+P L + +K+ VP+ HP+FNF+G++LGP+G T + L + C I + G
Sbjct: 115 --DPEWLEVDVAKPVKVCKKILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILG 172
Query: 526 KGSMRDKKKED--ANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVP 693
+GS +D++KE G P H + LHV + A ++A ++E+ R+L P
Sbjct: 173 RGSTKDREKEAELLASGDPQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 75.4 bits (177), Expect = 5e-14
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Frame = +1
Query: 166 GFKMCDNTNPSTQSIADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGV 345
G+ + T+P I L ++ + L + F + RLL+ E ++ ++
Sbjct: 61 GYPPQEMTSPLDAEIQAVLREIHLEVTGLETSGDQFRNARRLLNSEKERLENNI------ 114
Query: 346 KKEPLILPEPEGMVTTLTEKVYVPVKEHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRG 525
+P L + +K+ VP+ HP+FNF+G++LGP+G T + L + C I + G
Sbjct: 115 --DPEWLEVDVAKPVKVCKKILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILG 172
Query: 526 KGSMRDKKKED--ANRGKPNWEHLADDLHVLLTVEDTENRAKIKLARAVDEVKRLLVP 693
+GS +D++KE G P H + LHV + A ++A ++E+ R+L P
Sbjct: 173 RGSTKDREKEAELLASGDPQHAHFSGPLHVKVETVAPAYIAYGRVAAVIEELSRILQP 230
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 51.2 bits (117), Expect = 9e-07
Identities = 21/42 (50%), Positives = 35/42 (83%)
Frame = +1
Query: 652 LARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSS 777
+A AV+ ++RLL P DG+DEL ++QL+++++INGTYR +S+
Sbjct: 1 MAHAVEVIQRLLSPPKDGKDELKRQQLVDISLINGTYRVTST 42
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 439 NFVGRILGPRGMTAKQLEQETGCK-IMVRGKGSMRDKKKEDANRGKPNWEHLADDL 603
N G I+G G T +QL++++GCK I+V+ S+ D+ K G P LA L
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRITGDPQKIELAKQL 156
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 445 VGRILGPRGMTAKQLEQETGCKIMVR 522
VG I+G +G T K+L ETG KI +
Sbjct: 197 VGIIIGKQGDTIKRLAMETGTKIQFK 222
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 439 NFVGRILGPRGMTAKQLEQETGCK-IMVRGKGSMRDKKKEDANRGKPNWEHLADDL 603
N G I+G G T +QL++++GCK I+V+ S+ D+ K G P LA L
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRITGDPQKIELAKQL 219
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 445 VGRILGPRGMTAKQLEQETGCKIMVR 522
VG I+G +G T K+L ETG KI +
Sbjct: 260 VGIIIGKQGDTIKRLAMETGTKIQFK 285
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 439 NFVGRILGPRGMTAKQLEQETGCK-IMVRGKGSMRDKKKEDANRGKPNWEHLADDL 603
N G I+G G T +QL++++GCK I+V+ S+ D+ K G P LA L
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRITGDPQKIELAKQL 197
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 445 VGRILGPRGMTAKQLEQETGCKIMVR 522
VG I+G +G T K+L ETG KI +
Sbjct: 238 VGIIIGKQGDTIKRLAMETGTKIQFK 263
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 211 ADYLAQLLKDRKQLAAFPNVFMHMERLLDEEIAKVRASLFQINGVKKEPLILPE 372
A +LA + RK+ + LLD I KVR + F ++G K + + P+
Sbjct: 3574 APHLADFERGRKRFQHLLTLHAKQRPLLDMMITKVRGTYFMVSGKKFKRKVFPK 3627
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 634 NRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNADEEW 813
NR K+ LAR DE+K + DE +L+ I G Y + ++V + + +E+
Sbjct: 10 NRKKVLLARIKDELKTIPSSNQMSTDE-KMEELVRRRICIGEYDEQLARVCLDIEDEEKG 68
Query: 814 R 816
R
Sbjct: 69 R 69
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 634 NRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNADEEW 813
NR K+ LAR DE+K + DE +L+ I G Y + ++V + + +E+
Sbjct: 76 NRKKVLLARIKDELKTIPSSNQMSTDE-KMEELVRRRICIGEYDEQLARVCLDIEDEEKG 134
Query: 814 R 816
R
Sbjct: 135 R 135
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 634 NRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNADEEW 813
NR K+ LAR DE+K + DE +L+ I G Y + ++V + + +E+
Sbjct: 10 NRKKVLLARIKDELKTIPSSNQMSTDE-KMEELVRRRICIGEYDEQLARVCLDIEDEEKG 68
Query: 814 R 816
R
Sbjct: 69 R 69
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 634 NRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNADEEW 813
NR K+ LAR DE+K + DE +L+ I G Y + ++V + + +E+
Sbjct: 76 NRKKVLLARIKDELKTIPSSNQMSTDE-KMEELVRRRICIGEYDEQLARVCLDIEDEEKG 134
Query: 814 R 816
R
Sbjct: 135 R 135
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 631 ENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSK 780
ENR K+KLA++ + P A + K L+E + T D+S++
Sbjct: 282 ENRRKVKLAKSASHDRTPSTPDAIAASKTNKNYLLERLLTGKTAIDNSNE 331
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 631 ENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSK 780
ENR K+KLA++ + P A + K L+E + T D+S++
Sbjct: 343 ENRRKVKLAKSASHDRTPSTPDAIAASKTNKNYLLERLLTGKTAIDNSNE 392
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 631 ENRAKIKLARAVDEVKRLLVPQADGEDELXKRQLMELAIINGTYRDSSSK 780
ENR K+KLA++ + P A + K L+E + T D+S++
Sbjct: 307 ENRRKVKLAKSASHDRTPSTPDAIAASKTNKNYLLERLLTGKTAIDNSNE 356
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 448 GRILGPRGMTAKQLEQETGCKIMVRGKGSMRDK 546
GR++G G + LE ET C+I + + K
Sbjct: 148 GRLIGKEGALLRNLEAETNCRIQIPNRDGPSSK 180
>U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical
protein C43G2.2 protein.
Length = 869
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 628 TENRAKIKLARAVDE-VKRL-LVPQADGEDELXKRQLMELAIINGTYRDSSSKVSVPVNA 801
T+N+ ++ ++V E VK+L L+ +A+ ED + + L + + +GT D ++ S+P+N+
Sbjct: 417 TQNQG-VQTEKSVQEIVKKLRLLARANAED-VPRVSLADEGVESGTETDVNASRSIPLNS 474
Query: 802 D 804
D
Sbjct: 475 D 475
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 334 INGVKKEPLILPEPEGMVTTLTEKVYVP 417
I +KKEPL +P EGM+ TE +P
Sbjct: 334 IREIKKEPLEVPSTEGMIQLPTEYGNLP 361
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 334 INGVKKEPLILPEPEGMVTTLTEKVYVP 417
I +KKEPL +P EGM+ TE +P
Sbjct: 334 IREIKKEPLEVPSTEGMIQLPTEYGNLP 361
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 334 INGVKKEPLILPEPEGMVTTLTEKVYVP 417
I +KKEPL +P EGM+ TE +P
Sbjct: 334 IREIKKEPLEVPSTEGMIQLPTEYGNLP 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,059
Number of Sequences: 27780
Number of extensions: 411169
Number of successful extensions: 1239
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -