Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K05
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    27   5.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81527-16|CAB04280.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 21  CPMRAVPSTTTTSCQKQC-EP 80
           CP+ A PST T+SC   C EP
Sbjct: 489 CPLNAHPSTCTSSCPSTCAEP 509


>Z81527-15|CAB04279.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 21  CPMRAVPSTTTTSCQKQC-EP 80
           CP+ A PST T+SC   C EP
Sbjct: 501 CPLNAHPSTCTSSCPSTCAEP 521


>Z81110-8|CAB03263.1|  915|Caenorhabditis elegans Hypothetical
           protein T01D3.6b protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 21  CPMRAVPSTTTTSCQKQC-EP 80
           CP+ A PST T+SC   C EP
Sbjct: 489 CPLNAHPSTCTSSCPSTCAEP 509


>Z81110-7|CAB03262.1|  927|Caenorhabditis elegans Hypothetical
           protein T01D3.6a protein.
          Length = 927

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 21  CPMRAVPSTTTTSCQKQC-EP 80
           CP+ A PST T+SC   C EP
Sbjct: 501 CPLNAHPSTCTSSCPSTCAEP 521


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 89  LYVWLTLLLARCCCGGRDCSHRTC 18
           LY ++T+L A CCC G+D + +TC
Sbjct: 547 LYFFMTILCA-CCCKGKDHA-KTC 568


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 3   CQVXPTCPMRAVPSTTTTSCQKQCEPHVQNLIXKXYIMKLTTELTLXQATS 155
           CQ        AV +    SCQ QC+P  + +        +  ++ L  A+S
Sbjct: 659 CQTACATQTPAVQAAPAPSCQPQCQPACEPVCIAQQAQPVRIQINLATASS 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,317,461
Number of Sequences: 27780
Number of extensions: 87773
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)