Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K04
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   3.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   7.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   7.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   7.6  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 154 SALPSLIGRRLRHYSLRPQRILLTPP 77
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 136 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 237
           S MG+LK   DD++ +   ++ LR+    S  ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 608 IKPEAKSAALANIRPLTAAKAMIPRK 531
           +K + KS+AL  + P+T  + ++P+K
Sbjct: 468 VKQQKKSSALKIVNPVTHTEVVVPQK 493


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 346 GPLDSPWLWARRVKARRTWLI 284
           GPL   WLWA+  +   +WL+
Sbjct: 526 GPLVPFWLWAKEYELFNSWLM 546


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 195 FLETQCDVVIGASFQHSHH*SEDVFVIIR 109
           +LE Q ++  G      HH S+DVF++IR
Sbjct: 231 YLELQRNICQGNLSCWDHHYSDDVFLLIR 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,990
Number of Sequences: 5004
Number of extensions: 55849
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)