Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K04
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08)                30   2.0  
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)                    29   4.6  
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)               29   6.1  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 608 IKPEAKSAALANIRPLTAAKAMIPRKTGMRDWIFS*RSASMGR 480
           I+P A    +ANI+P+   K +   +  +RDW FS + +   R
Sbjct: 509 IQPMAPIQPMANIQPIDPNKPVQSLRNAVRDWAFSDKKSDFRR 551


>SB_36093| Best HMM Match : Globin (HMM E-Value=1.6e-08)
          Length = 205

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 566 PLTAAKAMIPRKTGMRDW-IFS*RSASMGRSCFNFFFLPRPSSKDRFAD 423
           PL A +  + RKT    W I   R   +G+S F  FF   P+SKD F +
Sbjct: 31  PLDAKETQLVRKT----WAILGDRQVEVGKSLFLRFFEEHPTSKDLFPE 75


>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
          Length = 334

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 447 RSR*EEEVEATPAHTGTPSTEDPVSHPRLPR 539
           R++ +E +  TPA   TPST  P S    PR
Sbjct: 179 RAKEKERIPLTPATPSTPSTPSPTSETPRPR 209


>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
          Length = 275

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 471 EATPAHTGTPSTEDPVSHPRLPRNHCLCR 557
           EA  A T +P  E P    +LPRN  LCR
Sbjct: 7   EAEKAETSSPEKESPKK--KLPRNRLLCR 33


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 471 EATPAHTGTPSTEDPVSHPRLPR 539
           E+   HT  P TE P++HP L R
Sbjct: 178 ESPMVHTSLPYTESPIAHPSLIR 200


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 567  TLDGGKGNDSEEDGDERLDLQL 502
            T +GG+ +D EEDG  +L ++L
Sbjct: 1286 TAEGGESSDEEEDGSPKLTIEL 1307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,991,296
Number of Sequences: 59808
Number of extensions: 483758
Number of successful extensions: 1493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)