Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K02
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    27   1.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   2.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   4.8  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   6.3  

>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 416 GVIEVLQFVIQISDKFSELIQESFGQGTVLQELSRHVLQQS--YGVFLASQVLDRVQVTE 243
           G+  +  F  + +D+++  + +S+   +  Q L   ++     +G FL+S ++DR+    
Sbjct: 29  GITNMRDFQSRFADRYNP-VTDSYSYSSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRT 87

Query: 242 DIPYW 228
            I +W
Sbjct: 88  SIMFW 92


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 42  YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 158
           +  +  +LT+ PN    L+T+H    S Y Y LK+    DS+N
Sbjct: 33  FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 404
           HL  +E +      V+L L+Y    L K    ++ LL Q  E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 66  TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 194
           T+   +++ L+T  S   YVLK + +   +NV  V  Q E +N
Sbjct: 50  TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 278  ASQVLDRVQVTEDIPYWLGTGH 213
            A +V   VQ T+D P W+  GH
Sbjct: 1143 AHEVKGSVQSTDDTPKWMVNGH 1164


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 243 FGHLHSIEDLGGKKHAVRLLEYVPGE 320
           +G LH I++LGG +  + L+E V  +
Sbjct: 71  YGLLHDIKELGGTEEDLELIEDVESD 96


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 306 YVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSR 431
           ++ G  LK   L E + Y +G+ +    NKL   + +  VSR
Sbjct: 449 HISGRTLKEISLDEPIRYAMGDRIELWLNKLLCLDAASYVSR 490


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 234  RNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLS 344
            RN   HL S +D  G    V  + Y+P +     P+S
Sbjct: 1826 RNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPIS 1862


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 376 TNSPS*YRRASDRGQFFKSSPGTYSSSLTACFLPPRSSIE 257
           T+S    RR S  G F   +    SS+ T+ +LP  S+ E
Sbjct: 183 TSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,804
Number of Sequences: 5004
Number of extensions: 34940
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)