Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K02
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)                   79   2e-15
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     69   3e-12
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   8e-10
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)             29   1.6  
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    29   1.6  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  29   2.8  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)                27   6.5  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               27   6.5  
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)          27   8.6  
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               27   8.6  
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
          Length = 407

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
 Frame = +3

Query: 15  VLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 194
           VL++ E   + D+N+ +      +N    N  P  +VLKI NS+DS+N  V +A+N++M 
Sbjct: 74  VLEMREFKSFFDRNFYIRGQVRTENNGNPN-KPQEFVLKIHNSLDSENEEVRDAENQLMR 132

Query: 195 FLATRSVTCPK--PVRN--IFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEA-- 350
            L  R   CP+  P RN  +    HL + +        VRLL +V G+ L +   S+   
Sbjct: 133 MLRDRGFPCPEIIPTRNGQLMEKIHLPASDGQNADGCVVRLLSFVYGQELDSLDKSDVTP 192

Query: 351 -LLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPXLEKFKYVIKD 494
            L+Y LG+F+ +    +++F+ S L  RQH W +     +++    IKD
Sbjct: 193 ELMYTLGKFIGDASKAMKDFSSSALRRRQHTWDIKNFLHIQEQLASIKD 241


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
 Frame = +3

Query: 120 YVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRN------------IFGHLHSI 263
           +VLKI+NS DS N  ++ A+N  +++L  R   CP  ++             + G +   
Sbjct: 58  FVLKILNSSDSSNEELIYAENAAIDYLRERGYPCPMVLKAWNDKRLAKADLPVRGSIKGN 117

Query: 264 EDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMW 443
              G ++  +RLLE VPGE L +   +  +LYQ+GEF+ ++   LQ F+H  + +R   +
Sbjct: 118 GKDGTERCIIRLLELVPGETLASISTTSKMLYQVGEFIGSVSGSLQGFSHLAIDARYDRY 177

Query: 444 MLSMVPXLEKF 476
            L     LE +
Sbjct: 178 DLKNFQDLEPY 188


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 22/157 (14%)
 Frame = +3

Query: 12  SVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIM 191
           SV  + EL  YDD+N+ L     ++N      +  G++LK+ N   S++  +++  ++++
Sbjct: 52  SVSLVKELISYDDRNFYL--QGFIQNEEQEPANLRGFLLKVSNPAFSKSQSILKGNSDLL 109

Query: 192 NFLATRSVTCPKPVRNIFGHLHSI----------------------EDLGGKKHAVRLLE 305
            +L+ R +TCP P  +  G LH++                      ED      AVRL  
Sbjct: 110 LYLSKRDITCPVPYSSRNGELHTMCNFSGQLGNATACGSYKVLSKDEDNADGACAVRLFS 169

Query: 306 YVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHS 416
           YV G LL+   L+E +LY LG  VA++   +++F+++
Sbjct: 170 YVSGSLLEKVALTEDVLYDLGASVASMHKAMKDFSNT 206


>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 39  GYDDKNYK-LTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEA 176
           G+ DK  + LT DP   +  ++  SP  ++  +++ I  QNV +VE+
Sbjct: 262 GFGDKAIEALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVES 308


>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
          Length = 551

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 351 LLYQLGEFVANLDNKLQNFNHSGLVSRQHMWM 446
           LL  +   + NLD    ++NH     +QHMW+
Sbjct: 263 LLGSMASIITNLDAMRASYNHHLTAIKQHMWL 294


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +3

Query: 57  YKLTEDPNMKNPLITNHSPYGYVLKIMN-SIDSQNVGVVEAQNEI-MNFLATRSVTC-PK 227
           + LT DP+  NPL+     Y  ++K +N +I      + +  N++  N   T+   C P 
Sbjct: 400 FDLTADPSESNPLVPTKPHYNEIMKHINKAIKHHQDTIAQVPNQLSKNICLTKMEACRPC 459

Query: 228 PVRNIFGHLHSIEDLGGKKHAVRLLEYVPGEL 323
               +F  L     L   +    +L ++  +L
Sbjct: 460 LSCYVFALLVIFSSLASSQKKPNILIFIVDDL 491


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 267 DLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSG 419
           D+G      + L+ V GELLKNC +   +L +L +  A +D+ +   +H G
Sbjct: 370 DVGRDVKNQQQLDDVRGELLKNCEV--LVLAELDDLRAPMDDNMVFMHHPG 418


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/33 (39%), Positives = 25/33 (75%)
 Frame = +3

Query: 84  KNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQN 182
           ++P+ TN+S YG+VLK+  +   +++GVV A++
Sbjct: 63  RSPIETNYSIYGHVLKLTPA--QKDLGVVVARD 93


>SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)
          Length = 851

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +3

Query: 165 VVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIEDLGGKKHAVRLL----EYVPG----E 320
           +V+    +MNFL   S    KP       L SI+ +   K  ++++    +Y  G    +
Sbjct: 228 MVKTPKNVMNFLVQASQKLKKPAEKELRILESIKKMESGKKQIKIMPWDFQYYTGLAKTQ 287

Query: 321 LLKNCPLSEALLYQLGEFVANLDNKLQN 404
            LK   LS +  + LG  +  L+   QN
Sbjct: 288 ALKLNSLSLSAYFPLGSCMEGLNFIFQN 315


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 232 YGISSVTCTLSRTWEARNTP*DCWSTCRESS*RTVPCPKLSC 357
           YG    TC   +     NT  +C  TC+E    T+ C   +C
Sbjct: 380 YGSCDQTCERGKCQLRCNTRENCKQTCKEGKCLTMSCKAKNC 421


>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
          Length = 704

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 TEYLRSPALYRGPGRQETRRKTAGVRAGRALE 328
           ++YLR  + YR   R E+ RKT  +R G   E
Sbjct: 136 SDYLREKSFYRLQKRIESERKTRVMRGGEMKE 167


>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 817

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 177 QNEIMNFLATRSVTCPKPVRNIFGHLHSIEDLGGKKHAVRLLEYVPGE 320
           +NE+ N    +++    P   IF  L  + DL  K H +++L+  P +
Sbjct: 255 RNEVNNNSKRKTIYIKDPTCGIFYELDDVSDLSNKSH-LKILDTPPAK 301


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = -3

Query: 443 PHVLSADQTGVIEVLQFVIQISDKFSELIQESFGQGTVLQELSRHVLQQSYGVFLASQVL 264
           P  ++ D      +   V+  + +  ++ +  FGQ   +  +   V+Q+ +      QV+
Sbjct: 269 PVAMATDDLHTFTIKDQVVVCTVELQKIFEALFGQSVSMSLVKLGVIQKKFTPLQLDQVM 328

Query: 263 DRVQVTE 243
           D V V E
Sbjct: 329 DFVDVDE 335


>SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 259 LSRTWEARNTP*DCWSTCRESS*RTVPCPKLSCISSENLSLIWITNCR 402
           +S+TW         W   R  S R   C KL+C+S   LSL W+   +
Sbjct: 441 VSKTWNGERGT-GIWE--RVISGRAQRCSKLTCVSLALLSLKWMRRAK 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,295
Number of Sequences: 59808
Number of extensions: 265988
Number of successful extensions: 1650
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)