Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_K02
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.77 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.77 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  LDLTELNGYDDKNYKLTEDPNMKNPLITNH 107
           L    + G+DD    LT D N +NP  + +
Sbjct: 255 LQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  LDLTELNGYDDKNYKLTEDPNMKNPLITNH 107
           L    + G+DD    LT D N +NP  + +
Sbjct: 345 LQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -3

Query: 482 ILEFLQLW-DHREHPHVLSADQTGVIEVLQFVIQISDKFSELIQESFGQGTVLQELSRHV 306
           +L    LW D R    +++A     + ++  ++ +SD   +L   S     +L      +
Sbjct: 268 LLTLTVLWLDSRSTERMIAAS----VNLICHILCMSDLHWQLPHNSTNPPNILLYYRDSL 323

Query: 305 LQQSYGVFLASQVLDRVQVTEDIPYWLGT 219
               + + L + +    +++ ++PYW+ T
Sbjct: 324 ALSVFALILTALLRKMQEMSIEVPYWIST 352


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 93  LITNHSPYGYVLKIMNSIDSQNVGVVEAQNE 185
           ++T  SPYGYV  I    +     +V  QNE
Sbjct: 318 ILTPVSPYGYVKPISPEQEELIHRLVYFQNE 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/51 (15%), Positives = 25/51 (49%)
 Frame = +3

Query: 309 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVP 461
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIP 526


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/51 (15%), Positives = 25/51 (49%)
 Frame = +3

Query: 309 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVP 461
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIP 526


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 81  MKNPLITNHSPYGYVLKIMNSID 149
           M  P    + PY   ++I++S+D
Sbjct: 460 MSRPFEVRYDPYTQRVEILDSVD 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,441
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)