Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_J24
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 188 2e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 1e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 162 2e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 8e-32
09_02_0366 + 7941550-7942161,7942230-7942775 28 4.7
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 4.7
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 188 bits (459), Expect = 2e-48
Identities = 93/134 (69%), Positives = 107/134 (79%)
Frame = +3
Query: 69 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 248
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 249 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 428
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 429 VTNAAARLRSQENE 470
VTN ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 1e-42
Identities = 82/122 (67%), Positives = 97/122 (79%)
Frame = +3
Query: 69 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 248
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 249 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 428
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 429 VT 434
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 162 bits (394), Expect = 2e-40
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +3
Query: 165 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 344
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 345 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 470
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 69 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 161
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 133 bits (322), Expect = 8e-32
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = +3
Query: 57 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 236
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 237 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 344
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 459 GSGGERPHSSL*C*AAGLFPRSASASSKRHHERSLRSTSCFASSRFPAL*HCELGPYGIH 280
G+GGE S+ L+P S+ +HH S+S +S+ A H G G H
Sbjct: 27 GAGGEEDDQSMLL--LSLWPPGHSSHHHQHHHHGAASSSACSSASISAAAHSG-GGGGGH 83
Query: 279 LGAYDGSSCW 250
A +S W
Sbjct: 84 GAAAAAASSW 93
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 159 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 320
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 321 EILMMQNRKYCAEIAH 368
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,595
Number of Sequences: 37544
Number of extensions: 275094
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -