Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J19
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   0.78 
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    28   1.0  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   3.2  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   3.2  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   5.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   5.5  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    25   7.3  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   7.3  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   9.6  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 203 PYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRA 376
           P  HS  LP+E S+DNT    T    +    NEM P       +N ++  +H   P A
Sbjct: 103 PSFHSFGLPQEDSQDNTQTYSTPYTTM-NPSNEMHPYPPATFENNYSVLPDHSSQPNA 159


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 323 KQLSNLTLTTEHRWYPRARD 382
           K L+NL LTT   WYP   D
Sbjct: 225 KNLNNLNLTTNSHWYPCGPD 244


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 86  YLTRKIALIPRVALSRFYNKIVITDDGSTIVALHQDYDFPYEHSRALPEETS 241
           YL  K   +P V +    N+IV   DG+ I+AL+       +H R + +  S
Sbjct: 197 YLKAKELHLPLVHIFNVENEIVENCDGNHILALNFSLQTLLQHGRIVRKSNS 248


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 248 NTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKKAKKTEMN 409
           +T  ++ D  E+ +   E + E   KQLSN     EH  + R +  +A K  M+
Sbjct: 313 STNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMD 366


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 344 LTTEHRWYPRARDKKAKKTEMN 409
           L +  RW  RARD+K +K   N
Sbjct: 23  LKSSRRWTDRARDRKRQKRNSN 44


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 PRVALSRFYNKIVITDDGSTI 175
           PR+ +S FY K+  + DG+T+
Sbjct: 384 PRLRISSFYVKLACSPDGATL 404


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 322 SCKFRFHFIEDSFNFI*IGH 263
           +C    H I D+FNFI +GH
Sbjct: 169 ACAAGCHAIGDAFNFIKLGH 188


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 79  NVLFNSQNSINPKSGIK 129
           N +FNSQNS+ P+  I+
Sbjct: 217 NTIFNSQNSLTPQKKIQ 233


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 191 DYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRV 292
           DY   +EH   + E + KD  + K+   +E+ RV
Sbjct: 234 DYHNTFEHICKILENSVKDKFIEKLVSKEELTRV 267


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 257 LKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEH---RWYPRARDKKAKKTEMN 409
           L+M DL ++ R       E +RK L+       H   RWYP+     ++K+  N
Sbjct: 92  LQMEDLQQLSR-------ETSRKSLNRRVSFASHARVRWYPKDHQSDSEKSTSN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,222
Number of Sequences: 5004
Number of extensions: 27631
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)