Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J18
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    32   0.70 
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    29   3.7  
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701...    29   4.9  
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585...    29   6.5  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   8.6  

>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 306 LPFTLILSLIKSSTM*WKKVTNDWLVNSLRKHSKISKGNKLNDTIW 443
           L   L++SLIK +   WK+  ND  +N+   H  + +G K   T W
Sbjct: 131 LSLVLLVSLIKEAFEDWKRFQNDMSINN--AHVDVLQGQKWETTPW 174


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 82  CTNFFLSTVKKLQLQFINKNTIKTPNSKLCEGDKLSRLLSKSNI*KRRSSETHCRFGF 255
           CT    S+   +QL+F N +T  T +   C  D+ +  L  S    + S  + C + F
Sbjct: 122 CTGCPSSSGLNIQLEFFNPDTSSTSSKIPCSDDRCTAALQTSEAVCQTSDNSPCGYTF 179


>11_06_0247 -
           21669299-21669348,21669673-21670012,21670110-21670199,
           21670280-21670339,21670564-21670856,21671176-21671245,
           21671623-21671970,21673188-21673318,21673418-21673901,
           21674839-21675558
          Length = 861

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +2

Query: 221 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKA 400
           E+Q +L A S   +R   PV+ PTV+ T     +   +K  N + E    ++ R +    
Sbjct: 490 EEQARLNAASSFSSRTEAPVE-PTVAGTLGETLE-ANSKYGNKLDENYENKMTRTVEAAR 547

Query: 401 FENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 511
             ++ RK   +  LA    EKA+  L   +   K  E
Sbjct: 548 HADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTE 584


>12_01_0685 +
           5848758-5849162,5849282-5849341,5849803-5849919,
           5850013-5850110,5850470-5851020,5851118-5851221,
           5851298-5851387
          Length = 474

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 159 IWSFDSVLVNELKLEFFNRR 100
           +W F SVLVNE K +  NRR
Sbjct: 340 LWEFPSVLVNEGKTDTLNRR 359


>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 IRNYAKATSFPDYYQNPIFRK 220
           ++N +KA SFP+ Y+NP   K
Sbjct: 567 VQNLSKALSFPESYENPYLMK 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,161,117
Number of Sequences: 37544
Number of extensions: 395482
Number of successful extensions: 996
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)