Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_J18
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-45|CAC70123.2| 222|Caenorhabditis elegans Hypothetical p... 135 3e-32
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 36 0.050
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 36 0.050
Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF016425-1|AAD34668.1| 458|Caenorhabditis elegans Hypothetical ... 30 2.5
Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 29 5.8
U64599-2|ABB88205.1| 420|Caenorhabditis elegans Unidentified vi... 29 5.8
U64599-1|AAB04560.3| 426|Caenorhabditis elegans Unidentified vi... 29 5.8
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 28 7.7
U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z99281-45|CAC70123.2| 222|Caenorhabditis elegans Hypothetical
protein Y57G11C.34 protein.
Length = 222
Score = 135 bits (327), Expect = 3e-32
Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 2/199 (1%)
Frame = +2
Query: 188 PDYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGN 367
P +++P+ ++ K + D +N + +K T Y D +++K+I + G
Sbjct: 26 PRVFRDPVTNVQELRKPLDSDDERN--FLFLKAMKSDATPVFYRDHVIDKLIRVCTKDGE 83
Query: 368 KRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIK 547
K +R+ V A E IKR+Q + + AS EEK IEL+P + K ++NC PL++LQ +
Sbjct: 84 KETSRKNVLSALEIIKRRQYKAWAKASE-EEKKSIELDPFLVAKKGIKNCHPLMKLQGVT 142
Query: 548 RGGITYQVPGPITEKRSLFLAIKWLLE--TTDEKERTVHFPEQFAWELLEASNNTGKVVK 721
RGG TYQVP PI E + F A+K + + K HF + A ELL AS N G ++
Sbjct: 143 RGGTTYQVPFPIEEPEAEFRAMKMMRDICRVRSKHGETHFKDILATELLAASQNEGSTIQ 202
Query: 722 RKQDLHRQCEANRAYAHYR 778
KQ+LH+ CEANRAYAHYR
Sbjct: 203 AKQELHKTCEANRAYAHYR 221
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 35.5 bits (78), Expect = 0.050
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 374 LARQLVEKAFENIKRK-----QIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQ 538
LA+Q +K+FEN ++ ++ R L S P + L D+LY AVE C L
Sbjct: 424 LAKQSKDKSFENFRQHIENLVEMLRNQLQSFPFGLDYLSLFSSDLLYSAVEQCFDFYPLV 483
Query: 539 PIK 547
PIK
Sbjct: 484 PIK 486
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
protein ZK328.7a protein.
Length = 1332
Score = 35.5 bits (78), Expect = 0.050
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 374 LARQLVEKAFENIKRK-----QIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQ 538
LA+Q +K+FEN ++ ++ R L S P + L D+LY AVE C L
Sbjct: 424 LAKQSKDKSFENFRQHIENLVEMLRNQLQSFPFGLDYLSLFSSDLLYSAVEQCFDFYPLV 483
Query: 539 PIK 547
PIK
Sbjct: 484 PIK 486
>Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical
protein T05C12.5 protein.
Length = 168
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 239 IADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKR 418
I+D++ T+ V P ++TS+ + V +E N +L RQL+EK + +K+
Sbjct: 3 ISDTERHQHYTISVCPVLQTDTSTT------SSVAKRQIESKNAQLLRQLIEKKNKKLKK 56
Query: 419 K 421
K
Sbjct: 57 K 57
>AF016425-1|AAD34668.1| 458|Caenorhabditis elegans Hypothetical
protein F59A7.1 protein.
Length = 458
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -1
Query: 612 IAKNNDLFSVIGPGTWYVIPPLLMGCNCNNGLQFSTALYKMSLGFN 475
I K ND +S+I W V P G NG S Y M L ++
Sbjct: 399 ITKTNDKYSIID---WQVYPASFNGILTGNGFTLSPVTYSMELQYD 441
>Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical
protein JC8.13 protein.
Length = 331
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 86 LIFFYRRLKNSSFNSLTRTLSKLQIRNYAKATSFPDYYQ--NPIFRK--EDQVKLIADSD 253
L F R+L + SFN + +S NY + F D +Q +P+ + D V ++ S
Sbjct: 203 LYLFRRKLPHESFNLIQSIISSFYSSNYRR---FFDIFQQLDPLLKHSLSDCVSILRQSA 259
Query: 254 LKNRATVPVKPPTVSETSSVYFD 322
+KN +V K P S + D
Sbjct: 260 MKN-ISVAFKTPVARLPSQLLSD 281
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 215 RKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVME-KGNKRLARQLV 391
RK + KL+ + A K + SSV D + + + KRL R
Sbjct: 261 RKRESAKLVEKVLQEEEAAEKRKTEDRVDLSSVLTDDETENMAYEAWKLREMKRLKRNRD 320
Query: 392 EKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYK 502
E+ ++ ++++ H S E + LNPK I K
Sbjct: 321 EREEAAREKAELDKIHAMSEEERLKYLRLNPKVITNK 357
>U64599-2|ABB88205.1| 420|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 6, isoform b
protein.
Length = 420
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 334 INERIKVNGRRFRNRRWLHRYSCSVLQIRICNEFHLIFFSKYWILIIVWKACRLRIISNL 155
+ E K + R RN+R Y ++ FHL+ +S +W+ + R+RI + L
Sbjct: 210 LREAAKGSRRLHRNKRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNLFSAIFRVRITTQL 269
>U64599-1|AAB04560.3| 426|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 6, isoform a
protein.
Length = 426
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 334 INERIKVNGRRFRNRRWLHRYSCSVLQIRICNEFHLIFFSKYWILIIVWKACRLRIISNL 155
+ E K + R RN+R Y ++ FHL+ +S +W+ + R+RI + L
Sbjct: 210 LREAAKGSRRLHRNKRSRSSYQRVTRSVQRVVLFHLLCWSPFWLFNLFSAIFRVRITTQL 269
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 262 VLQIRICNEFHLIFFSKYWILIIVW 188
V Q+ I N FHL F +YW + W
Sbjct: 1182 VTQLIIVNTFHLALFVQYWTWPMFW 1206
>U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical
protein C04E6.11 protein.
Length = 995
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 74 MSNVLIFFYRRLKNSSFNSLTRTLSKLQIRNYAKATSFPDY-YQNPIFRKEDQVKLIADS 250
M+N + FF+R + + ++R SK+ + + AT+FP + + R+ D ++A
Sbjct: 1 MNNGVKFFHRNFL--TLHRISRFSSKISQLSISAATTFPSIEIDSKLVRRGDFRGVVASK 58
Query: 251 DLKNRATVP 277
+ KNRA+ P
Sbjct: 59 E-KNRASNP 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,396
Number of Sequences: 27780
Number of extensions: 399089
Number of successful extensions: 1276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -