Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J16
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   4.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   7.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 151 CNSTKSLSSSFRSIRYRLLYVHDDF 77
           CN +K +S     + +RL+Y  +++
Sbjct: 305 CNGSKGISPEQEELIHRLVYFQNEY 329


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 222 FIITEYLSFFVSCIVLLYSRCFH-NAIQQKACPHPFDRYVIDFFMFMMILI 73
           + +  +L+  +  +V +YS+ FH N I  K     F    +  F + +I++
Sbjct: 35  YAVAFFLALSIGVVVSIYSKSFHRNEIHIKIVLMFFKEASLYCFNYYVIVV 85


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 252 ILA*ICKRILFIITEYLSFFVSCIVLLYSRC 160
           ILA  C  I +      +FF +C++ + ++C
Sbjct: 170 ILAFACISIAYTNVSTDAFFYTCLIQIETQC 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,296
Number of Sequences: 336
Number of extensions: 3584
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)