Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J16
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    29   0.87 
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    27   2.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   4.7  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   8.1  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   8.1  

>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 612 F*NIRLLISQSDMFPYCSLVFTLQYIFSINLINSVIKY 499
           F +IRLLI+ + + P   L F ++Y++   ++ S +KY
Sbjct: 32  FEDIRLLIAIACIIP-AGLAFGIEYVYGFGVLKSYLKY 68


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 835 WQHGNIFSRFIYAYGTRSVLFERVFENCLVNSVMRLIRRGTVWE 704
           WQ  + F+  IYA   + VL E V E+     +    R GT W+
Sbjct: 62  WQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRNGTSWD 105


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 672 LIESI*IVITTSQTVPRLINLITELTKQFSNTRSNKTLLVPYA*INLLKMLPCCQKCLIW 851
           L+E +   + ++    +   +++ L    +N  +NKT+L+PY  +N+L+ L   Q    W
Sbjct: 75  LLELVIKYVPSNVLQAKFPQILSVLAPVVNNAETNKTVLLPY--LNVLEKLLLLQDYSSW 132


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 264 KMADILA*ICKRILFIITEYLSFFVSCIVLLYSRCFHNAIQ 142
           K  D L+   KRIL++  E+++  V   + +Y + F NA Q
Sbjct: 457 KAMDELSTSEKRILWLCYEHVAMHVETTLYIYVQSFQNANQ 497


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 178 NDATNKKAQIFCDDKKNSFANLCKNV 255
           +DA N+K ++ CD    +FAN   NV
Sbjct: 344 DDAQNEKVRLCCDAAGTNFANCYWNV 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,392
Number of Sequences: 5004
Number of extensions: 59175
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)