Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J16
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56813-1|AAC50933.1|  608|Homo sapiens polycystwin protein.            33   1.0  
U50928-1|AAC50520.1|  968|Homo sapiens PKD2 protein.                   33   1.0  
BC112263-1|AAI12264.1|  968|Homo sapiens polycystin 2 protein.         33   1.0  
BC112261-1|AAI12262.1|  968|Homo sapiens polycystin 2 protein.         33   1.0  
AF004873-1|AAC16004.1|  968|Homo sapiens autosomal dominant poly...    33   1.0  

>U56813-1|AAC50933.1|  608|Homo sapiens polycystwin protein.
          Length = 608

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 400 FIFYFIKEALCTVRMSFLYRQKKYWTCMYIKVVV 501
           FIFY++ E +  +R+  L+  + +W C+ + +VV
Sbjct: 123 FIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVV 156


>U50928-1|AAC50520.1|  968|Homo sapiens PKD2 protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 400 FIFYFIKEALCTVRMSFLYRQKKYWTCMYIKVVV 501
           FIFY++ E +  +R+  L+  + +W C+ + +VV
Sbjct: 483 FIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVV 516


>BC112263-1|AAI12264.1|  968|Homo sapiens polycystin 2 protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 400 FIFYFIKEALCTVRMSFLYRQKKYWTCMYIKVVV 501
           FIFY++ E +  +R+  L+  + +W C+ + +VV
Sbjct: 483 FIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVV 516


>BC112261-1|AAI12262.1|  968|Homo sapiens polycystin 2 protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 400 FIFYFIKEALCTVRMSFLYRQKKYWTCMYIKVVV 501
           FIFY++ E +  +R+  L+  + +W C+ + +VV
Sbjct: 483 FIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVV 516


>AF004873-1|AAC16004.1|  968|Homo sapiens autosomal dominant
           polycystic kidney disease type II protein protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 400 FIFYFIKEALCTVRMSFLYRQKKYWTCMYIKVVV 501
           FIFY++ E +  +R+  L+  + +W C+ + +VV
Sbjct: 483 FIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVV 516


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,752,748
Number of Sequences: 237096
Number of extensions: 1805327
Number of successful extensions: 2712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2712
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)