Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   2.6  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   2.6  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   3.5  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   4.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.0  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.0  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   6.0  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   8.0  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 567 LERVEELWNIAKTLYNRWRLKEKEESIYENAFGP 668
           L+++  +W+++ TL  R  L+  +ES+Y  AF P
Sbjct: 463 LDQIIRVWSVSGTLVER--LEGHKESVYSIAFSP 494


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +3

Query: 255 LINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYS-GF- 428
           L+N  + LS TN ++  +  V ESL    N    LL        V+      D  +  F 
Sbjct: 141 LLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLL----YLSGVVYRKRKQDSKAIDFL 196

Query: 429 -STVFNCPFIWSSSLE 473
            S V   PF WS+ LE
Sbjct: 197 KSCVLKAPFFWSAWLE 212


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 345 RWDALTMTRLHIALRYTCDSYLIDRLL 265
           RW   T  RLH  LR+  +++L+D LL
Sbjct: 239 RWRQKTRERLHQKLRFQKNAFLLDVLL 265


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 459 SSSLEPHPMILRLIDSLPNPAYFPDHTSSLEPPYTFLERVEELWNIAKTLYNRWRLKEKE 638
           SSS+ P    +++   LP  A   D  SS       LER   L  ++  L N    K +E
Sbjct: 82  SSSISPQSKKIKVALQLPGAARIIDEASSETSIKQLLERHSLLTKVSHVLINGRNFKSEE 141


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 249  KKLINKEV---DLSDTNHKYIVMQYVTESLLM 335
            K+L NKE    +LSD + KYI +Q + E+LL+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLL 1162


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 408 YTSTQQSRHQTFDLYPKA 355
           Y  +Q +RH  FD++PK+
Sbjct: 181 YAGSQLNRHSVFDIFPKS 198


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 582 ELWNIAKTLYNRWRLKEKEESIYE-NAFGPALKKRNRVLPPYNEVKYN 722
           EL ++ KT  N   +    ++ Y  NA   +LK  NRVL  YN VK N
Sbjct: 451 ELQHLRKTSKNDEDMSYVRKNSYNTNALANSLK--NRVLSTYNTVKAN 496


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 666 PALKKRNRVLPPYNEVKYNGSLILGNSHVSTGVAFXL 776
           P + ++   +PPY + K NGS ++ +  V+T  A+ +
Sbjct: 213 PLMAEQLPKIPPYVKTKKNGSKVIVDPVVTTSRAYMI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,628
Number of Sequences: 5004
Number of extensions: 68562
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)