Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J11
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0036 - 22307328-22308026                                         27   3.6  
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    27   3.6  
06_03_0745 + 24109406-24109921                                         26   6.2  

>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 178 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 80
           RP  R G    + +R V+    CRC+   C  HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 187 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 65
           +C  P + S  G ++ D  + S+C CS  S   S+H DA   A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389


>06_03_0745 + 24109406-24109921
          Length = 171

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -1

Query: 175 PSDRSGPGCVSTDRN----VRSKCRCSNVSCSSH 86
           P  R GP   ST R         CRC N+ C+ H
Sbjct: 103 PKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMH 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,215,513
Number of Sequences: 37544
Number of extensions: 103727
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)