Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_J11
         (331 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   0.56 
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           22   6.9  
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          21   9.1  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          21   9.1  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          21   9.1  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    21   9.1  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    21   9.1  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 157  PGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPR 47
            P    T  NVR+  + + V+ S+  + QLTA   DPR
Sbjct: 1230 PNISLTHSNVRNSYQLTRVAPSNRTNNQLTAQHQDPR 1266


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 186 YAAGPQTGVVLD 151
           YA+G  TGVVLD
Sbjct: 144 YASGRTTGVVLD 155


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 186 YAAGPQTGVVLD 151
           YA+G  TG+VLD
Sbjct: 144 YASGRTTGIVLD 155


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 186 YAAGPQTGVVLD 151
           YA+G  TG+VLD
Sbjct: 144 YASGRTTGIVLD 155


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 186 YAAGPQTGVVLD 151
           YA+G  TG+VLD
Sbjct: 144 YASGRTTGIVLD 155


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 36   DHLARGSMKNAVNCAS*CELQDTFEHRHFE 125
            D+L R    ++ +C     + +T EH  FE
Sbjct: 928  DYLCRNGFTSSPDCQRCSGVPETAEHAMFE 957


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 187 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPR 47
           L + P+  S     S+  + R+  R ++V C S   +    F  +PR
Sbjct: 20  LSNPPTCTSAKMMASSGMSTRASARSASVDCRSSLASGSKLFAPEPR 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,076
Number of Sequences: 2352
Number of extensions: 3618
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22910151
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)